HsaINT0132948 @ hg38
Intron Retention
Gene
ENSG00000007038 | PRSS21
Description
protease, serine 21 [Source:HGNC Symbol;Acc:HGNC:9485]
Coordinates
chr16:2817227-2817456:+
Coord C1 exon
chr16:2817227-2817332
Coord A exon
chr16:2817333-2817429
Coord C2 exon
chr16:2817430-2817456
Length
97 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
TCACTTCTTGTCTCCCGCAGAGT
3' ss Score
12.22
Exon sequences
Seq C1 exon
GAGAGGAGGCAGAGGGGGCGTCAGGCCGCGGGAGAGGAGGCCATGGGCGCGCGCGGGGCGCTGCTGCTGGCGCTGCTGCTGGCTCGGGCTGGACTCAGGAAGCCGG
Seq A exon
GTGAGCTCGGGGCGCTGCTGGCGGGATGGGGAGGCGGGGGAGCGGTGGGGAGGACGGGAGGTGGAGGCCGCGGGGAGTCACTTCTTGTCTCCCGCAG
Seq C2 exon
AGTCGCAGGAGGCGGCGCCGTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007038:ENST00000005995:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=NA C2=0.396
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development