HsaINT0132951 @ hg19
Intron Retention
Gene
ENSG00000007038 | PRSS21
Description
protease, serine, 21 (testisin) [Source:HGNC Symbol;Acc:9485]
Coordinates
chr16:2867802-2868970:+
Coord C1 exon
chr16:2867802-2867967
Coord A exon
chr16:2867968-2868677
Coord C2 exon
chr16:2868678-2868970
Length
710 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
GCTCTCTTCTCTTCTGCCAGCTA
3' ss Score
7.78
Exon sequences
Seq C1 exon
GACCATGCGGCCGACGGGTCATCACGTCGCGCATCGTGGGTGGAGAGGACGCCGAACTCGGGCGTTGGCCGTGGCAGGGGAGCCTGCGCCTGTGGGATTCCCACGTATGCGGAGTGAGCCTGCTCAGCCACCGCTGGGCACTCACGGCGGCGCACTGCTTTGAAAC
Seq A exon
GTGAGTGGGGGTGCGAACGGAGGGGTGCGGGGACGGGCAGGAACAGGGCTGGAGGGAGTGCCACCGAACTTTACCTCTGGTCTGATGCCAGACTTGGGCGTGAAAGTTGTGCGTGGATGCGGCCTGGTGTTCTCCTGAGCCCCAGGCTGTGCTGCAGCCGGTTACACCCACTCCAGTTCCCTTTGGGTCTCCTGGAGGGAACCCTGTTCAGGTTATTCCAGAATGTTCTTCCAGAACATTTCCACACACTTTTGGGTATTCTCTCCCTTTTTCTTTCAACCCAAAGTTCACCACTGACCATCCCACCCTCATCCCCCCTCCTGGTGGACGGTGCGGTACAGTGTGGGGCACTGAGCCAAGGCCAGCACCCCCGGGCCGCTGTGTGGACTCCATCCTGCCAATCCCACATTGGCGTGGTGCATCTCCCCATTCCTCCTTGGGCTGCATGGGGGTGCCCCTGGAGGCCTTGGCTCAATGCAAGGCTCCTTGGGACAGCTCTGGGAGGTGACAAGACCCCACCCTTCTGCTGCAGGAGCAGGTCCTAGGACTTTGGTTGTGGTCTGTCTGGGCTCCTTCATTTCTGCAGGGGACCCTGGGTGTTAGCAAGTAGCAGCAACACCACAGTTTCCCCTCCTGCACTGGACCCCAGTTGTGCTCAGGTAGCCAGCCCTCCATCCAGGGCCCCTGACTGCTCTCTTCTCTTCTGCCAG
Seq C2 exon
CTATAGTGACCTTAGTGATCCCTCCGGGTGGATGGTCCAGTTTGGCCAGCTGACTTCCATGCCATCCTTCTGGAGCCTGCAGGCCTACTACACCCGTTACTTCGTATCGAATATCTATCTGAGCCCTCGCTACCTGGGGAATTCACCCTATGACATTGCCTTGGTGAAGCTGTCTGCACCTGTCACCTACACTAAACACATCCAGCCCATCTGTCTCCAGGCCTCCACATTTGAGTTTGAGAACCGGACAGACTGCTGGGTGACTGGCTGGGGGTACATCAAAGAGGATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007038-PRSS21:NM_144957:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.3=78.6)
A:
NA
C2:
PF0008921=Trypsin=FE(40.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCCCACGTATGCGGAGTG
R:
TCTTTGATGTACCCCCAGCCA
Band lengths:
356-1066
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)