MmuINT0127502 @ mm9
Intron Retention
Gene
ENSMUSG00000024114 | Prss41
Description
protease, serine, 41 [Source:MGI Symbol;Acc:MGI:1918253]
Coordinates
chr17:23979212-23980577:-
Coord C1 exon
chr17:23980409-23980577
Coord A exon
chr17:23979493-23980408
Coord C2 exon
chr17:23979212-23979492
Length
916 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
ACTTTCATCTTCCCTGCTAGGTA
3' ss Score
11.01
Exon sequences
Seq C1 exon
TGCCCTGTGGCCGCCGGAATGACACTCGGTCCCGGATAGTGGGCGGGATAGAATCCATGCAAGGGCGCTGGCCGTGGCAGGCCAGCCTGCGCTTGAAGAAGTCCCACCGCTGCGGAGGGAGCCTTCTCAGCCGCCGCTGGGTGCTCACTGCTGCACACTGCTTTAGAAA
Seq A exon
GTGAGTGTGGGATGGTAGGAGCGGGGTGGGACAGCCTCCTGATATCCTGAGCTCCAAGCGCTGCTTACAATCCAAAAACCTTACCATTGGCCCTGCAGGGGGCGCCACTCTAATTCTTCCAGGATGTTTTATTCAAACATTCCCATGCTGTTTCGGGTCTATTCATCTATGCTCACTGCCCCCTACCATATCGAATTAGGAAGGCGCAGGTCTCATTCCACCTTCCCTTGGAGGTTCCCAAGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGATTGGTTGGTTGGTTTTGAGGTGCCTTGAACTTTTTACTTAACAGAAGATGACTTTGAACTTCTGATCCTCTGGCCTCTACCTCTTGGCATGCTAGGATTACAAACGTGCACCTCCATGCCTGAGTCTATACAATTCGGGGGGGGAGGGGGGTCAAACCCAGGGATTCACTCATGATAAGCAAACTGTCTATTGAGTTACATCCCCAACCCCATACCAGATATGAATTCTATTCAGAGAGGCCCTTAAGAAGTGACCAGACCAACCAGGCAGTGGTGGCGCACGCCTTTAATCCCAGCTCTTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTTGAGGTCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAAGCCTGTCTCGGAAAAAAAAAAAAATAGTGACCAGACCATTGGGGACTGTGGTCTTCCTGTTTCTCTCCTCAGAGTCCCAGGAGAAGGGAATCTGGTTATGTCTAGGCTTTGTTTCTACAAGGGGGTCTCAGCAAGTAAATAGTACCAGAGCTACGGTGTCACCTCACACAGAGATCCGGTGGCTCAGGTGGCCAGCGTCCTCCTGAGGGTCCTGATCACTTTCATCTTCCCTGCTAG
Seq C2 exon
GTACCTTGATCCAGAAAAGTGGACCGTCCAGCTTGGGCAGCTTACATCCAAGCCGTCTTACTGGAACAGGAAGGCCTATTCTGGACGGTACAGGGTAAAGGACATCATCGTAAACTCCGAAGACAAGCTGAAGTCCCATGACCTGGCCCTGCTGAGGCTGGCCTCCTCGGTCACCTACAACAAGGACATCCAGCCTGTCTGTGTGCAGCCTTCCACCTTTACGTCCCAGCACCAGCCCAGGTGCTGGGTGACCGGCTGGGGAGTCCTTCAGGAGGATTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024114-Prss41:NM_027644:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=77.2)
A:
NA
C2:
PF0008921=Trypsin=PU(47.9=95.8)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACACTCGGTCCCGGATAG
R:
AGACAGGCTGGATGTCCTTGT
Band lengths:
351-1267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: