HsaINT1028197 @ hg38
Intron Retention
Gene
ENSG00000007038 | PRSS21
Description
protease, serine 21 [Source:HGNC Symbol;Acc:HGNC:9485]
Coordinates
chr16:2817801-2818969:+
Coord C1 exon
chr16:2817801-2817966
Coord A exon
chr16:2817967-2818676
Coord C2 exon
chr16:2818677-2818969
Length
710 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
GCTCTCTTCTCTTCTGCCAGCTA
3' ss Score
7.78
Exon sequences
Seq C1 exon
GACCATGCGGCCGACGGGTCATCACGTCGCGCATCGTGGGTGGAGAGGACGCCGAACTCGGGCGTTGGCCGTGGCAGGGGAGCCTGCGCCTGTGGGATTCCCACGTATGCGGAGTGAGCCTGCTCAGCCACCGCTGGGCACTCACGGCGGCGCACTGCTTTGAAAC
Seq A exon
GTGAGTGGGGGTGCGAACGGAGGGGTGCGGGGACGGGCAGGAACAGGGCTGGAGGGAGTGCCACCGAACTTTACCTCTGGTCTGATGCCAGACTTGGGCGTGAAAGTTGTGCGTGGATGCGGCCTGGTGTTCTCCTGAGCCCCAGGCTGTGCTGCAGCCGGTTACACCCACTCCAGTTCCCTTTGGGTCTCCTGGAGGGAACCCTGTTCAGGTTATTCCAGAATGTTCTTCCAGAACATTTCCACACACTTTTGGGTATTCTCTCCCTTTTTCTTTCAACCCAAAGTTCACCACTGACCATCCCACCCTCATCCCCCCTCCTGGTGGACGGTGCGGTACAGTGTGGGGCACTGAGCCAAGGCCAGCACCCCCGGGCCGCTGTGTGGACTCCATCCTGCCAATCCCACATTGGCGTGGTGCATCTCCCCATTCCTCCTTGGGCTGCATGGGGGTGCCCCTGGAGGCCTTGGCTCAATGCAAGGCTCCTTGGGACAGCTCTGGGAGGTGACAAGACCCCACCCTTCTGCTGCAGGAGCAGGTCCTAGGACTTTGGTTGTGGTCTGTCTGGGCTCCTTCATTTCTGCAGGGGACCCTGGGTGTTAGCAAGTAGCAGCAACACCACAGTTTCCCCTCCTGCACTGGACCCCAGTTGTGCTCAGGTAGCCAGCCCTCCATCCAGGGCCCCTGACTGCTCTCTTCTCTTCTGCCAG
Seq C2 exon
CTATAGTGACCTTAGTGATCCCTCCGGGTGGATGGTCCAGTTTGGCCAGCTGACTTCCATGCCATCCTTCTGGAGCCTGCAGGCCTACTACACCCGTTACTTCGTATCGAATATCTATCTGAGCCCTCGCTACCTGGGGAATTCACCCTATGACATTGCCTTGGTGAAGCTGTCTGCACCTGTCACCTACACTAAACACATCCAGCCCATCTGTCTCCAGGCCTCCACATTTGAGTTTGAGAACCGGACAGACTGCTGGGTGACTGGCTGGGGGTACATCAAAGAGGATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007038:ENST00000005995:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.3=78.6)
A:
NA
C2:
PF0008921=Trypsin=FE(40.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCCCACGTATGCGGAGTG
R:
TCTTTGATGTACCCCCAGCCA
Band lengths:
356-1066
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains