RnoINT0118763 @ rn6
Intron Retention
Gene
ENSRNOG00000033690 | Prss41
Description
serine protease 41 [Source:RGD Symbol;Acc:1584711]
Coordinates
chr10:13185758-13186918:-
Coord C1 exon
chr10:13186750-13186918
Coord A exon
chr10:13186039-13186749
Coord C2 exon
chr10:13185758-13186038
Length
711 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
ACTTTCTCCTTCCCTGCCAGGTT
3' ss Score
11.42
Exon sequences
Seq C1 exon
TGCCGTGTGGCCGCCGGAATGACATTCGGTCCCGGATAGTGGGCGGGATAGAATCCGTGCGAGGGCGCTGGCCGTGGCAGGCCAGCCTGCGTTTGAGGAAGTTCCACCGCTGCGGAGGGAGCCTTCTCAGCCACCGATGGGTGCTTACTGCTGCACACTGCTTTAGAAA
Seq A exon
GTGAGTTTGGGATGGCTGGAACCGGATGGGGCAGCCTCCTGATACCCTGAGCTCCAAAATGAGCTGCAGCTGTTTACAATCAAATAATCTTCCCGGTCTCGTTCCACCTTCCCTTGGAGGCAGATTCTATCTAGGCCCACACCAACGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTCGGTCGGTTTTGAGTCCCAAGTTGGCCTTGAACTTTTTACTTAGCAGAGGATGACTTTGAACTTCTGATCCTCTTGCCTCTACCTCCTGGCATGCAACGATCACACACGTGCCGGAGTCTATACAATGTCCCCGGGGTCAAACCCAGGGATTCACTCGTGCTAAGCAAACACTCCAGAATTATATCCCCAACCCCATACCAGATATCCACTCTATCCTGTCAGGCCCCACCGTAGCCTCTCCAGCTTTTGATTCATCTTTGCACTGCACAGGTTCCTTAGAGAAGCCCAGTGTCCTTAAGAAGTGACCAGACTGCTGGAGACTGTGGTCTTCATGTTTCTCTCCTCGGAGTGACAGGAGAAGGGTTATGCCCTGCCTAGGCTCTGTTCCTACAAAGGGGATCTCAGCAAATAAACAGCGCTGGCCCCTCACACAGAGACCCAGTGGGCTCAGGCGGGCAGCAGGCCTCCTGAGGGTCCTGATCACTTTCTCCTTCCCTGCCAG
Seq C2 exon
GTTCCTTGATCCAAAAAAGTGGACGGTCCAGCTTGGGCAGCTGACCTCCAAGCCTTCTTTCTGGAACAGGGAGGCCTTCTCTGGCCGGTACAGGGTAAAGGACATCATCATAAACTCCGAAGACAAACTGAAGTACCATGACCTCGCCCTGCTGAGGCTGGCCTCCTCGGTCACCTACAACAAGTTCATCCAGCCTGTCTGTGTGCTGCCTTCCGCCTCCATGTCCCAGCACCAGCCCCGGTGCTGGGTGACCGGCTGGGGAGCCCTCCAGGAGGATTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033690:ENSRNOT00000007039:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=77.2)
A:
NA
C2:
PF0008921=Trypsin=FE(39.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATAGTGGGCGGGATAGAA
R:
GAAGGCAGCACACAGACAGG
Band lengths:
350-1061
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]