HsaINT0132989 @ hg19
Intron Retention
Gene
ENSG00000178226 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:26906]
Coordinates
chr16:31157110-31159996:-
Coord C1 exon
chr16:31159716-31159996
Coord A exon
chr16:31157277-31159715
Coord C2 exon
chr16:31157110-31157276
Length
2439 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCTCTGGTTCTGCCTCCAGATC
3' ss Score
11.27
Exon sequences
Seq C1 exon
GAATGGGACGCTGGAGCCCGCGGCCGAGTGGTCGGTACTGCTGGGCGTGCACTCCCAGGACGGGCCCCTGGACGGCGCGCACACCCGCGCAGTGGCCGCCATCGTGGTGCCGGCCAACTACAGCCAAGTGGAGCTGGGCGCCGACCTGGCCCTGCTGCGCCTGGCCTCACCCGCCAGCCTGGGCCCCGCCGTGTGGCCTGTCTGCCTGCCCCGCGCCTCACACCGCTTCGTGCACGGCACCGCCTGCTGGGCCACCGGCTGGGGAGACGTCCAGGAGGCAG
Seq A exon
GTGAGTGGGACGGGACAAGAGGGGAGGGCCTCGGGGAGGTGGGGCTTCGAGAGGTGAGGTTCCTAGGGCGGGGCCTCAGGAGGTGGGGCCACGGAGCGGAGCCTGCGGGGAGCGTTGGAGGGTAGGTTTCTGCGGGTCGGTGGATGAATCCCACACCGATCTCCATGTAGCCTTCTCCCTGCAAGGATTCTCAAACTAAGACCACGGAATCACCCACACGCACCCCATTCCCTCCTTACCTGTCCTTCCAGTTTTTTCTTTCCTGGGTTTAGGCTCCGACTAGGGTTCCCATCCCAGCTCTAACATGTCAGACAAAGCACTTCACCCAGTACATTTCCTCATCTGTAACACGAGGAAAATAGCCATACCCACTTCAAGGGGTGGTTGAGTGGATTAAATGAGAAAATCCATGTAAAGTTCATAGTACAGTGCCTGGCATAGCAATAACCAATGCACTTTACATATTTCACCTCAGGTAATCTATAGTAAAGCACTACAGCATAAGGCTGGCCTATAATAGATATTCAGCAAATGCCAGTCTGTGCCTCCCTCCCATCCGCCTTCCTCTCATTCCATCCACCCCCACTCATCTCTCTACTCCCCACCTCCTCTCTTCTTCCTACCCACCATCATTCATTCAATCATTCTTTCACTCAAGATATTTCTTGAGCACCTTCTACATGCCAGGCACCGTGTTAGGCATTAGAGAGACACCAGTGAACATAAAAAGCCAAAATCCTGCCTTTTCAGAGTTTACATCCTAGGAGATAGACAAGCAACAAATTCAATAAATAAGCACGCATTATGTTAGAAGGTGGGGGGGAATAGACCAAATCTCCATCCCCATCATCCCCATCACCCAAGCTTTCCATGCTCCCAGGGCCCCCACAAATATCCACATCAGCCGTGGTCAGACCTGTGCCCATCCTCGGGGCTTTGGGTAGGTGCTACAGGGGAAGATGCTACAGCCTCTGCTTGTGGAGGTCCCATCAGGGCAGGAGGTGATGAGGAAGCGTCACTGTGAGCCCCAGGAAGTCTGTGTGAATGGGGCCAGGCCATCCTAACAATGGGCACCCAGAGAGGGAGATTTCTGCAGAGATTTTTGAAGAGAGGGTACATTGCAGGAAGATGGGGGGAGATGAAGGCCACCCTGTGGACCCAGATAAGTCATGTTAGATGAAGAAGGGCCAGGATGCCAGGCTGGAGTGAGAGGGGTACAGGCACCTGGGCTGCAAAGGCTGCTGTGGCCCGGCCATGAAGACCTTAAGATCAGACTGAGGGCCAGAGCACCCCACCAGCTCCAGGGACGCCCAGGACAATCCCCAACTTCCCTGGTGAGCCCCAAGTACAGCTTCAGCCATCACCTGACCTCAAATTCTTTTCTTTTTTTCATCAATTCTTTTTTTCTTTTTGAGACAGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAACGGCGCGATCTAGGCTCACTGCAACCTCCGCCTCCCAGCTTCAAGCAGATTCTACTGCCTCAATCTCCCAAGTAGCTGGGATTATAGGCACCCACCACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACTATGTTGGGCAGGCTAGTTTTGAACTCCTAACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGAATTACAGGTGTGAGTCACCGCGCCTTTGACCTCAGATTCTGAGTGAGTTGGGGAAGGAGTTCTGTCTGTACTTCCCCCCACCCCCTACTCCTTTCTGGATCCTGAAGCTGTTTCCGTCAAAAGCAGGATGGGCTGCAGCACCAAGTTTAGACAGTGTGATCCGTTTATTTTTCTTGGTGAGATCAGAACTGAACTTGAGTAGCATTCCTCTTCATTGCTGAAGTGAAGAGTGGATCAGAAGGCTGGGTCAGTTATCCAGGCCCAAAGCTATGCAGCCTCAACTAGTGTAGTTGTTTAGAATGCCAAGACGTCACAAATGAGAGGTTTTCATGAACTGGGAACTGACTGGAGGAGGGGAGTTGAGAGAGGAGACAGGGATGACACCCAGATTCCATGCTTGGCAACTCAGGACAGGACCATGTCAAGTCCGTATGGCATCTCTGTGAAAAGATGTCTCTGGACCAACACAACTCCACGTGAGAGCTCAGAACTTAATGGTTTTAGTCCCTACATTGCATCCTTTGTTGCAGTGCACAACCTGCACAACCATGCATGGCAGCTCTCACTAGGAGCTTGATGAGACCATTCCTGAGATGAAAAAGTAGAAAGAACAGATAGAAGCAGGAGGAGATGTGGTGAATGTGGTGGGCTGAGAGGCCATGGGGCATCTAGCTGATGTCCAAGAAGCAGCCGCAGGAGGCAAACCTGAACCCTGGGAACTGGGGATGCCATACCTGCCTCACAGCACCTGCTCTCTGGTTCTGCCTCCAG
Seq C2 exon
ATCCTCTGCCTCTCCCCTGGGTGCTACAGGAAGTGGAGCTAAGGCTGCTGGGCGAGGCCACCTGTCAATGTCTCTACAGCCAGCCCGGTCCCTTCAACCTCACTCTCCAGATATTGCCAGGGATGCTGTGTGCTGGCTACCCAGAGGGCCGCAGGGACACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226-PRSS36:NM_173502:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)