DreINT0007588 @ danRer10
Intron Retention
Gene
ENSDARG00000062758 | CR352265.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1QV82]
Coordinates
chr24:21668213-21671539:-
Coord C1 exon
chr24:21671268-21671539
Coord A exon
chr24:21668350-21671267
Coord C2 exon
chr24:21668213-21668349
Length
2918 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGA
5' ss Score
9.78
3' ss Seq
TGAAACCCTCTTGATTCCAGGAG
3' ss Score
5.98
Exon sequences
Seq C1 exon
GTACTCTGATGCGCGCTCGTGGAGGGCCTACATGGGAATGCGAGTGATGAACTCAGTCAGTAACGCAGCAGCGACCAGACAAATCCGCCGCATCGTCCTGCATTCGCAATACGATCAGTTTACCTCAGACTATGACATTGCCCTGCTGGAACTGAGCGCTCCAGTGTTTTTCAATGAGCTGGTCCAGCCGGTCTGTGTACCGGCCCCATCCCACGTCTTCACCTCCGGAACCAGCTGCTTCGTCACTGGATGGGGAGTCCTGACTGAAGAAG
Seq A exon
GTACGACACTGTGGAGCAAATACATTCAGAAAAAAAAAGGATGTTTCTTGTTCAGCTGAAGCAAGACAACATTACGAAAACTGGGACACATGATTTAAAATAATGACTAAAGAGGAAACAATCTGAAAATGGGAAAGTCACATATTAGATATTCAACCTGTGATGCTAGCTGAATTTGACTAATATTGTTTTTAAAATTCTGGTTTACCACACAGTACTCAGCATAATTTTTAACCTCATGGTTTAATTTTTATTGTATGAAATAATATATAATTTGCCATCATTTTTACCATGTTTATTATATACAGATTGATAGATACCAGGGCTGAACTATATATTGTTTGAGCATCAATATTGCAATGTGTGTATCCACAATAATCACATCAGGGTTAGATTATTTATTAAAGATTAAAAGATACAGATATTATATTAACATAGTTATACACAATTATCTACACAATTATGACTATTACTAATGTTATTTTTGTTTGATTGTTCATGTTCTATATTTGAATACTATTAGACACCCCAGAAAACATAAAGCATAAAGTTTATTTAGCTTTTATTTTTGCTCTCTCTGATTTATATATGCTTGTAATTTATTATATTTTTTGCAGATGCACTGCATGGAAAAAAATCTTGATCTGCCCAGTCGATCTATATTAATTAAATATTTCTCGCTACTTAAATTTGTGAAATTACATTCATATTACAATATATATCGCAGCAAAACAAAATATCGCATTGTCAGATTTCTCCAATAATCATGCAGCCCTATACTCTGCTTAAAAGGTTTAGTTCACTCAAAAATGAAAATTACGCTATTATTTACTTACCTTTATGTTGTTTAAATCCCCTGAGAAGTTTGTTAGGATGTTAAGATCTTAACACAAATGATTATATTTTAGCTCTAATCTGAGAGCACTCTCATCTTCCATAGACAGCAATGGTCCCGACTTATGGTCTCATCTTATTCAAAGAAAAGTTCCTCAAAACAGACAATATGCCTTCATTGGTTCAATCGGAATATTATCAAGCCACGAGAATTATTTTGTGCGCACATAAAACTAAAATAACAACTTTATTCAACAGTTTCTTCTGCTCAGTGTGAGTATAGGGTGCACATTCACTGAAGCTATGTGCACTGATATACACATAACAATCACCTTACTCGCCATACTTTTTAACTAGTTGTTCACCTTACTTTTTCTAGTCGATTAATTATAGTACATTAAGACATTTTGTGTTTTGACACTTTTTTTGTTTTCTTTAATGTCATGTTTACATATTTCCATACATGCAAATGTATAATAACAAATAAACTAATTTAGCATACAATACAAGATTCTGAATTTATGAATTGAAAAAGCTTGTATCATTTTGTTAACATCATGGGGGGGATTTTAGACATTTCTTTAACCATAAATAGGAAAATACGTTTTACAGTCAAAAATATTTTATTATTACAAAGTAAAAAACATATTAATTATTAATATTAATTTTATATTAAAAGACCCCTTTTTTAAACCACCATGATATAGATGGGAAAAACTGGAAAGTTACAGTACAAGAGTAGTATATTACAAAGTTTCTTTTCTTGTTTTTCTGCCGCAAAATTTCACTTTCTGTTTCATTCTGCTATAGGTCTGCACAATACATTGTTTCATCATCGATATCGCAATGTAAACATCCACAATAGTCACATCACAGGATTCAATGTTGAGTCTGGATTATAGTTTATTATTTGCACGGGTTTTTTGAGGTCTGTAAGTGTATGAGGATTTTAAAAGCAATCGGCCTTAAGAAATTGTACTATTTGTCACTTTAATAACTAATAATTGAATTTAACTATTTGTGAATCGAAGACTATGCAATATTATATTACATTAATATTTATTTACATTTATTACTTGATACCTGAATACTGTTAGACTTCTCGGAAAACATTAAAACTTGTTCTTGTATATACTCCCTGACAAAAGTCTTGTCGACGATCCCAGTTGTAAGAGAAACAAATAATAACTTGACTTCTAGTGAATCATTTGGAGAGTGACAGAAGGTAAATTTTTCAGAGGAATTATCTGTTGAACTGCATCCCAATCATCTCAAATACTGCAGAAGACCTACTGGAACCCGCATGAACCCAAGATTCTCATAGAAATCAGTCAAGTTTGGTGAGGTAAAAATCATGGTTTGGGGTTACATTAGTATGGGGGCGCGCAAGAGATCTGCAGAGTGGATGGCAACTTCAACAGCCTGAGGTATCAAGACTTTTGTGCTGTCCATTACATTACAAACCACAGAAGAGGGATCAGCCTCCACATCAAAGTTCCTGAAAGCAAAGAAGATCAAGGTTCTCCAGGGTTGGCAAGATATGTCACAAGATATGAACATTATTAAGCATGTCTTGGTTAAGTTGAAGGAGGAGCCATTGAAGATGAATCCAAAGAATCTTGATGAACTCTGGGAGTCCTGCAAGACACGTTCTTTGCCATTTCAGATTAATTTTATTAATAAGTAATTTGAGTCATTGCAGAGATGTGTGGATGCAGTCGTCCAGGCTTATGGGAGTCATACACAATATTCTTTTTCCACTGCAACATGACTTTATATTCTGTACTGTACATTATTTCTGTTTAGTGACAAGACTTAAGTCTAAGTCCAACCTCACTGTCCCATTTAATTGATTAAAATTAAGGCATGCTCATATTTTATTTTGGTAAAATAAGCGTTATCTAGAGGCCTTAGCCTTTCATATAAGACACTTCTGATACCAAATTATCAACTAGAAGTCAAGTTATTATGTGTTGTTCCTAAAACTTGGACAGGTGACAAGACTTTTGTCAGGTAGTGTATACTTGGAGAAATCTGAATACTCTAATTTACTCATTAAACTGTTGAAACCCTCTTGATTCCAG
Seq C2 exon
GAGAACTAGCCACATTGCTGCAGGAAGCCACGGTTAACATCATCAATCACAACACTTGCAATAAAATGTACGATGATGCGGTCACTCCCAGAATGCTTTGCGCCGGAAACATTCAGGGAGGAGTGGACGCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062758:ENSDART00000091096:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]