BtaINT0141592 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019712 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:HGNC:11344]
Coordinates
chr29:36969948-36970623:+
Coord C1 exon
chr29:36969948-36970222
Coord A exon
chr29:36970223-36970486
Coord C2 exon
chr29:36970487-36970623
Length
264 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
CCGCCCTTGCTCCTCCGCAGGCC
3' ss Score
10.29
Exon sequences
Seq C1 exon
GTACTCGGAACACAGTGTGTGGACAGCCTTCCTGGGCCTGCATGACCAGAGCAAGCGCAACGCCCCGGGGGTTCAGGAGCGCGGGCTGCAGCGCATCATCAAGCACCCGTTCTTCAACGACTTCACCTTCGACTACGACATCGCGCTGCTGCAGCTGGACCGGCCGGTGGAGTACAGCGCCACCATCCGGCCCATCTGCCTGCCCGCGGCCGACTACACCTTCCCCACCGGCAAGGCCATCTGGGTCACCGGCTGGGGCCACACGCAGGAGGCAG
Seq A exon
GTGCGTGGGGGCCGAGGGTCTGCTCGCAACTGCACTGCTGTGGGATTCGGGGGCTTCGTGGCTGTCCTTCTGTCCCTTCCTTTCCCACACGGCTTCCCAGGATTGACACCCCCCCCCCGCCCCGCCCCCTCTGATGGTCAGGACACCCTGACCACTGTGTCCGGCTGCACAGCATCCCACCCGGCTCCGCGAGCCCTGGACCCGGGTCCTGCCTCCGCGGCCTGGCTTGGCGAGCTGCCCATGTCCGCCCTTGCTCCTCCGCAG
Seq C2 exon
GCCAGGGGGCTATGATCCTGCAGAAGGGCGAGATCCGGGTCATCAACCAGACGACTTGCGAGCACCTGCTGCCGCAGCAGATAACCCCACGCATGATTTGCGTGGGCTACCTCAGCGGTGGCGTGGACGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019712:ENSBTAT00000026272:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCATCAAGCACCCGTTCT
R:
AGGTAGCCCACGCAAATCATG
Band lengths:
295-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]