MmuINT0153111 @ mm10
Intron Retention
Gene
ENSMUSG00000031995 | St14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:MGI Symbol;Acc:MGI:1338881]
Coordinates
chr9:31090402-31091611:-
Coord C1 exon
chr9:31091337-31091611
Coord A exon
chr9:31090539-31091336
Coord C2 exon
chr9:31090402-31090538
Length
798 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CCCGCTTCCTGTCTCCCCAGGTA
3' ss Score
12.97
Exon sequences
Seq C1 exon
GTACTCAGACTACACGATGTGGACGGCCTTCCTGGGTCTGCTGGACCAGAGCAAGCGCAGTGCCTCTGGGGTGCAGGAGCTGAAGCTCAAACGTATCATCACCCACCCTTCCTTCAATGATTTCACCTTCGACTATGACATCGCCTTGCTGGAGCTGGAGAAGTCGGTGGAGTACAGCACCGTCGTGCGCCCCATCTGCCTGCCTGATGCTACCCATGTCTTCCCTGCTGGCAAGGCCATCTGGGTCACAGGCTGGGGGCACACAAAAGAGGGAG
Seq A exon
GTGAGCTTCATGCCAGACCAGGACCTGCAGAGAACCCTAGGCCTTCCTGCCAGGCTATGGGTTCTTGCATACCTGCAGCCTTGTGGTGTCTGGGCTGCACAGAGTCCATCTTGGCATCAGGGCTGGTGGTTTACTCAACGTCCCGGTGCCTGGCAGGATGAAGCTGTTGGGGGTGGAAAGAAGGAGGCTCCTAATAAGAAGTGTAGGATCTGCAGGTTGGGCTCTTGATTGAAGCTCCGACTCTGCCACTGAACTGCCTGAGTGGCCGTTGCTTCATCTACTATCTGTGGTGATTCATCTGTGAAAGCATCGTCACTGAGTGTGCACTCGGGTGTCCCTTTTCTACGTGGATAAGCTTTCGAGCTGGGCCCACACATGTTACCCACTGTGGGTCCTTGAGCCCTGTGGAGGACAAGCAGTTTGTAGGCAAACTTTAGATTGAAAGACTCCATTCCCAGATTGGTATAGTTCATGGAGAACATTCATATAGAAAGTAAAACCGTGGCTGAGAGTTTGGTCGGATTTTCGGTGGTTTGTCGCTTTCCATCCATTTCCTTCCTTGCTGTGCATCTGACCCATCCGCAGCAGTTTCGCAGCAGTTTTAATGGCTCCACAATATCCTGCCGTGTGTTCTCGGCTACTGACCTATTTATGTGTCAGCCGCAGGCTCTTGGGTTATTTCCAAGCACTGCCTATAAACCTGACCAGTGAGGATTATCTCCAGTGCGGGTTTTCCCCATTGAGACTGGCTTACCCCGGGAGCTGCCTGCCTCAGTCTCCCGCTTCCTGTCTCCCCAG
Seq C2 exon
GTACCGGAGCGCTGATCCTGCAGAAGGGTGAGATCCGTGTCATCAACCAGACCACCTGTGAGGACCTCATGCCGCAGCAGATCACCCCACGAATGATGTGTGTGGGTTTCCTCAGTGGGGGTGTGGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031995:ENSMUST00000034478:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCTGGACCAGAGCAAG
R:
CCACTGAGGAAACCCACACAC
Band lengths:
358-1156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types