RnoINT0144087 @ rn6
Intron Retention
Gene
ENSRNOG00000005903 | St14
Description
suppression of tumorigenicity 14 [Source:RGD Symbol;Acc:69288]
Coordinates
chr8:32241032-32241773:-
Coord C1 exon
chr8:32241499-32241773
Coord A exon
chr8:32241169-32241498
Coord C2 exon
chr8:32241032-32241168
Length
330 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTGGCTTACTGTCCCCACAGGAA
3' ss Score
11.07
Exon sequences
Seq C1 exon
GTACTCAGACCACACCATGTGGACAGCCTTCCTCGGTCTGCTGGACCAGAGCAAGCGCAGTGCCTCTGGGGTACAGGAGCACAAGCTCAAACGTATCATCACTCACCCTTCCTTTAATGACTTTACCTTCGACTATGACATTGCCTTGCTGGAGCTGGAGAAGCCGGCAGAGTACAGCACTGTCGTGCGCCCCATCTGCCTGCCTGATAATACCCATGTCTTTCCTGCCGGCAAAGCCATCTGGGTCACAGGCTGGGGCCACACGAAAGAAGGAG
Seq A exon
GTGAGTTTCAGGCCGGACCAAGACCTGCAGAGGGTTTCTGTGGGATTTTCGATGTTCTGACGTTTTCCGTCCAAGATATACCTTGCTGTATATCTGACCCATCAGCAGCCGCCATGCTGTGCAGTCTGGTTACTTTTAATGGCTACACAGTATCCTGCCATCTGTTGTCAGCTACTGACCTATTTATCTGTCAGCCGCAGGCTCTTGGGTTATTTCCTAACATTGCTTGTAAACATGACCAGTGGGGAGTATCTCCAGTGAGTTTTCCCCATGTAGACTGGCCTGTCCCAGGAGCTGCCTGCCTCAGTCCCTGGCTTACTGTCCCCACAG
Seq C2 exon
GAACTGGAGCACTGATCCTGCAGAAGGGAGAGATCCGGGTCATCAACCAGACCACCTGTGAGGAACTCTTGCCGCAGCAGATCACCCCACGAATGATGTGTGTGGGTTTCCTCAGTGGGGGTGTGGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005903:ENSRNOT00000009139:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCATGTGGACAGCCTTCC
R:
CATTCGTGGGGTGATCTGCTG
Band lengths:
358-688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]