HsaINT0159714 @ hg19
Intron Retention
Gene
ENSG00000149418 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:11344]
Coordinates
chr11:130078305-130079473:+
Coord C1 exon
chr11:130078305-130078579
Coord A exon
chr11:130078580-130079336
Coord C2 exon
chr11:130079337-130079473
Length
757 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CCGTCCTGCCCTCTCCCCAGGCA
3' ss Score
10.83
Exon sequences
Seq C1 exon
GTACTCAGACCCCACGCAGTGGACGGCCTTCCTGGGCTTGCACGACCAGAGCCAGCGCAGCGCCCCTGGGGTGCAGGAGCGCAGGCTCAAGCGCATCATCTCCCACCCCTTCTTCAATGACTTCACCTTCGACTATGACATCGCGCTGCTGGAGCTGGAGAAACCGGCAGAGTACAGCTCCATGGTGCGGCCCATCTGCCTGCCGGACGCCTCCCATGTCTTCCCTGCCGGCAAGGCCATCTGGGTCACGGGCTGGGGACACACCCAGTATGGAG
Seq A exon
GTAAGCTTCGGGCTGACCTAGGGCTCCGCAGAGGGCCTGGGGCCTTTCTCCAAGGCCGTGTTTCCTCTGCGTGTCCGGTCTCGGGGCGGGGGGCTGCTCCAGTCTCCCTCTGCCTGGCAGAATGAGGCTGTCCAGGGCGGAATGGAGGCCTTTAGTAAAAGGGGCATGGGATTTGCAGCCTGGGCTCAGGATTGAAGGTTGGCTTTGCCCCTAACTAGCTGAGTGACCTTGAGCGAGTTGCTTAAGCTCTGATCCTGTTTGTGCATGCGCGTAATGAAGATAGCAACACCTTAAGCCCAGTGGTGCTTAAGGCACGTGAGGGGGTGGGTATGAAGGGAAGCAGGCCGTTAGTTGGCAAATGCTAGATTGAAAGAATCCACTGTACAGCATATGCTGAACATTTGTCGTCTTTGGAGAGGAAAGAAAACGAACAGGACTTACAGCTCCAATGCCCTCACAGAACCCCGCGGGCATTTGCGGCGCCTTCCCTCCGCCTCTCTGCTTCTTGTTCCCTCACCCCTGCTTGCCACGGCGTCTGTTCCCTCTCAACTCGCCTGGCAGATCTCAGCATGCCCCTGCTTCCTCTAGGTGGCTGCTATTGCCAGAGCCCACTGAGTAGACGCGGATTACCCGTTTGTCAGCCCCGGGCATCTGGGCTGTTCCAGAGTTTTCTAGTCCAATGACCCGTGGGGAGCGTCTCGAATGACGCTGCCCTCGAAGCAGCCCGGCTCTCAGCCCCGTCCTGCCCTCTCCCCAG
Seq C2 exon
GCACTGGCGCGCTGATCCTGCAAAAGGGTGAGATCCGCGTCATCAACCAGACCACCTGCGAGAACCTCCTGCCGCAGCAGATCACGCCGCGCATGATGTGCGTGGGCTTCCTCAGCGGCGGCGTGGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149418-ST14:NM_021978:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCACGACCAGAGCCAG
R:
GGAAGCCCACGCACATCATG
Band lengths:
350-1107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)