HsaINT0133012 @ hg19
Intron Retention
Gene
ENSG00000188086 | PRSS45
Description
protease, serine, 45 [Source:HGNC Symbol;Acc:30717]
Coordinates
chr3:46783581-46784572:-
Coord C1 exon
chr3:46784403-46784572
Coord A exon
chr3:46784074-46784402
Coord C2 exon
chr3:46783581-46784073
Length
329 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
ACTCCTCTCTTTTTGCCTAGGGG
3' ss Score
9.66
Exon sequences
Seq C1 exon
GCTCCACAGCCAACTCCATGCTGACCCCAGAGCTGCAGGAGGCTGAGGTGTTTATCATGGACAACAAGAGGTGTGACCGGCATTACAAGAAGTCCTTCTTCCCCCCAGTTGTCCCCCTTGTCCTGGGGGACATGATCTGTGCCACCAATTATGGGGAAAACTTGTGCTAT
Seq A exon
GTGAGTTTCTGGGAGGTTCTGGTAGCTCTGCTTCTGCTGGGAACCACTCCTGGGTGGAGGCAGTTCCCTGGGGCGGGGTTGGCCCGGCCTCCCTCCGTTACCATCACCCAGTAGTGCTCTGCTCCTGTCTTCCTTCCCCTGTGATGCTGACTTTTGCCCTGATTCTGGGGTGTGGGTCCCAACTGAGGAGCCAAAAGAGGACCCCAAGTAGTGAGGTCCTGGAGGAGTGAAAACCCTCCCAGCAGAGCTCAGAGGGTGGGCATGGGTCCACAGGGCCCAGCAGGCCCAGCTGGACCCACAGCCTCCATCACTCCTCTCTTTTTGCCTAG
Seq C2 exon
GGGGATTCTGGAGGGCCATTGGCTTGTGAAGTTGAGGGCAGATGGATTCTGGCTGGGGTGTTGTCCTGGGAAAAGGCCTGCGTGAAGGCACAGAATCCAGGTGTGTACACCCGCATCACCAAATACACCAAATGGATCAAGAAGCAAATGAGCAATGGAGCCTTCTCAGGTCCCTGTGCCTCTGCCTGCCTCCTGTTCCTGTGCTGGCTGCTGCAGCCCCAGATGGGCTCCTGACCTCCCTACCTTTTCCTCCTCCTGCCTTGCCTCTGCTGAATGGGGCCAGATGGTTTGACCAAGGTCATGTGTCCATCTTCAAAAAGAGTCAGGGTGGGGAAGAGTAACCCCTGGGAGAATGGGTCTGGCTTTGGCATCCCGGTGAGGAGAAGTGTGGTGGATGACTAGGCCTTGGGTGAGCAGGAGAAGGGAAGTGTGGCCTAGAAGGATTCTGGAATCTGGGACCAGGAGAGCAGGGATTAAACATGTGCAAACTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188086-PRSS45:NM_199183:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(9.5=17.5),PF0008921=Trypsin=PU(53.5=94.7)
A:
NA
C2:
PF0008921=Trypsin=PD(44.6=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACAAGAGGTGTGACCGG
R:
AAAGGTAGGGAGGTCAGGAGC
Band lengths:
358-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)