MmuINT0127522 @ mm10
Intron Retention
Gene
ENSMUSG00000047257 | Prss45
Description
protease, serine 45 [Source:MGI Symbol;Acc:MGI:3605764]
Coordinates
chr9:110840387-110841313:+
Coord C1 exon
chr9:110840387-110840550
Coord A exon
chr9:110840551-110840844
Coord C2 exon
chr9:110840845-110841313
Length
294 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
CAGTCCTTTGTCTTCTCCAGGGA
3' ss Score
9.27
Exon sequences
Seq C1 exon
CCCAGTTGACACCGGCTCCAGAGCTTTGGGAAGCTGAGGTATTCATTATAGACAACAAGAATTGTGACAGCATTTTCCACAAGAAGACCTTGTATCCCCAAGTTGTCCCCCTTATCCGGAAGAACATGATCTGTACCACCAATTATGGGGAGGACTTGTGCTAT
Seq A exon
GTGAGTTTCTGGGAGCATTCTGGCAACTCTCTTTTTGGGGAGTGAGTCCTGGGATGGGGTCCTGTTCCCTGGGGCTTGGCCTCTTTCCTCCTTACTGTCACTTTGCTCTCACTGTCCTTTATGACTGTACTGGCTGCAATCCATAGGTGTGGTCTCCAACTGAAAAGCCAAGGGGCCCCCTAGCTGGTGCACTCCGGGAGAAATGATTCTTTCAAGCAGAACAGAACGGAGAGGGTGGGCATTGTAGGTCCTTTGGTTCCAGCAGAGCCTCTATCAGTCCTTTGTCTTCTCCAG
Seq C2 exon
GGAGACCCCGGGGGGCCATTGGCTTGTGAGATCGATGGCAGATGGATTCTGGCTGGGGTATTCTCATGGGAGAAGGCCTGCGCCACAGTACCGAATCTAAGTGTATACACCCGTATCACCAAATATACCATATGGATCAAGGACCAAGTGAGCCATGGGGCGCAGCTGGGGCCCTGCAGGACCTCCTGGCTTCTTCTCCTGCCCTGGCTGCTGCAGCTCCCAGTGAGCCTATGACTTCCCATCCCCTCTTCCTCTTCCTGTTTTGCATGGTGGCCTGTCCATATCCCACAGTCAGGGTGGCAACGGAATGGTCCCTGGAGAACTTGGGTCCTGCTTTGTCATCCTGGCAGGGAGGGCTGTGGTGGGTTACTGGGCCTCGCTTGACTGACCAGGAGAAGTGGGGGATTGCTCAGGAGCAGCATTTTGGAATTTAAGACCAAGAGCAGAGATTAAATTTGTGTTAGCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047257:ENSMUST00000146794:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.2=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCCTTATCCGGAAGAACA
R:
GGGGATGGGAAGTCATAGGCT
Band lengths:
305-599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types