RnoINT0118778 @ rn6
Intron Retention
Gene
ENSRNOG00000029649 | Prss45
Description
serine protease 45 [Source:RGD Symbol;Acc:1303021]
Coordinates
chr8:119117570-119118533:+
Coord C1 exon
chr8:119117570-119117733
Coord A exon
chr8:119117734-119117991
Coord C2 exon
chr8:119117992-119118533
Length
258 bp
Sequences
Splice sites
5' ss Seq
TATGTACGT
5' ss Score
3.41
3' ss Seq
CAGTCCCTTGTCTTCTCCAGGGA
3' ss Score
8.5
Exon sequences
Seq C1 exon
CCAAGTTGACACGGAGTCTAGAGCTTTGGGAGGCTGAGGTATCCATTGTTGACAACAAGAACTGTGACAGAGTCTTCCACAAGAAGACCTTCTATCCCCAAGTTATCCCCCTTATCCGGAAGAACATGATCTGTACCACCAATCATAGGGAGAACCCGTGCTAT
Seq A exon
GTACGTGAGTTTCTGGAAGCATTCTGGCAACTCTCTTTCTGGGGAGCAAGTCCTAGGACGGGGGCCTGTTTCCTGGGGGCTCAGCCTGTTCCCCCTTACCATCACCTGCTACATAGGTGTGGTCTCCAACTGAGAAGCTAAAGGAGCCCCAGCCAGTGAGCTCCAGGAGAAATGATTCTCTCAAGAGGAGCTGAGAGGGTGGGCATTGTAAGTCCTTTGGTCCCAGCAGAGCCTCCTTCAGTCCCTTGTCTTCTCCAG
Seq C2 exon
GGAGATCCTGGGGGACCATTGGCTTGTGAAGTCCATGGCAGATGGATTCTGGCTGGCATATTCTCGTGGGAGAAGGCCTGCACCAAAGCTCCGAATCTAAGCGTATACACCCGCATCGACAAATATACCGGATGGATCAAGGAGCAAGTGAGCCGTGGGGCGCGGTCCGGGCGCTGCAGGACCTCCTGCCTTCTGTTCCTGCCCTGGCTGCTGCAGCTCCCAGTCAGCCCAGGACCTCCCCACCCCTTCCTCTTCCTGCTTTGCCTCTGCTGAATGGCACTAGGTTGCCTCTCCATATTCCACAGGAGTCAGGGTGGGAATGGAATGACCCCTGGAGAACTTGGGTCCTGCTCTGGCGTCCTAGCAGGGAGGACTGTGGTGGGTGGGCTAGGCCTTGCTTGAGTGTCCAGGAGAAAGGGAGGATGTGCCTGTCAGGAGGAACGTTCTGGAATTTAAGACCAAGAGCAGAGATTAAATTTGTGTGAGAATGAGCTGTCTCTCTTCTTTCTTCCCCCACCCTGTTCTTTGGAGGGTGACTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029649:ENSRNOT00000043249:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.1=49.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTGGGAGGCTGAGGTAT
R:
GGCTCACTTGCTCCTTGATCC
Band lengths:
297-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]