HsaINT0133045 @ hg19
Intron Retention
Gene
ENSG00000052344 | PRSS8
Description
protease, serine, 8 [Source:HGNC Symbol;Acc:9491]
Coordinates
chr16:31143750-31144274:-
Coord C1 exon
chr16:31144003-31144274
Coord A exon
chr16:31143917-31144002
Coord C2 exon
chr16:31143750-31143916
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGCCTCTTTTACCCCCACAGTGA
3' ss Score
7.59
Exon sequences
Seq C1 exon
CGAGCACCACAAGGAAGCCTATGAGGTCAAGCTGGGGGCCCACCAGCTAGACTCCTACTCCGAGGACGCCAAGGTCAGCACCCTGAAGGACATCATCCCCCACCCCAGCTACCTCCAGGAGGGCTCCCAGGGCGACATTGCACTCCTCCAACTCAGCAGACCCATCACCTTCTCCCGCTACATCCGGCCCATCTGCCTCCCTGCAGCCAACGCCTCCTTCCCCAACGGCCTCCACTGCACTGTCACTGGCTGGGGTCATGTGGCCCCCTCAG
Seq A exon
GTGAGGTGGGACGCTGGGTGCCTAGAGGTGTGGAGGGGCACCTGACTTGGGGAGGGGCCCAGGGTAAGCCTCTTTTACCCCCACAG
Seq C2 exon
TGAGCCTCCTGACGCCCAAGCCACTGCAGCAACTCGAGGTGCCTCTGATCAGTCGTGAGACGTGTAACTGCCTGTACAACATCGACGCCAAGCCTGAGGAGCCGCACTTTGTCCAAGAGGACATGGTGTGTGCTGGCTATGTGGAGGGGGGCAAGGACGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000052344-PRSS8:NM_002773:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(6.2=5.4),PF0008921=Trypsin=FE(50.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTCAGCAGACCCATCACC
R:
TGATCAGAGGCACCTCGAGTT
Band lengths:
175-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)