MmuINT0127565 @ mm10
Intron Retention
Gene
ENSMUSG00000030800 | Prss8
Description
protease, serine 8 (prostasin) [Source:MGI Symbol;Acc:MGI:1923810]
Coordinates
chr7:127926745-127927270:-
Coord C1 exon
chr7:127926999-127927270
Coord A exon
chr7:127926912-127926998
Coord C2 exon
chr7:127926745-127926911
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGCACATTTTGTCCTCACAGTGA
3' ss Score
7.07
Exon sequences
Seq C1 exon
AGAACACAGCAGGGAAGCGTATGAGGTGAAGCTGGGGGCCCACCAGCTAGACTCCTACAGCAATGACACTGTGGTCCACACAGTGGCTCAGATCATCACCCACTCAAGCTACCGAGAAGAGGGCTCCCAGGGGGACATCGCGCTCATCCGCCTCAGCAGTCCTGTCACCTTCTCCCGCTACATCAGACCCATCTGCCTCCCTGCAGCCAATGCCTCCTTTCCCAACGGCCTTCACTGTACTGTCACGGGATGGGGTCATGTGGCTCCTTCAG
Seq A exon
GTGAGGTGGGGCACTGGGTGCCAAAGGTCAAGGAAGGGAGGCCGACTGAGATTGGGGACCGTGAGTAAGCACATTTTGTCCTCACAG
Seq C2 exon
TGAGCCTCCAGACCCCTAGGCCTCTGCAGCAGCTCGAGGTACCACTCATCAGCCGGGAAACCTGTAGCTGCCTGTACAACATTAATGCGGTGCCTGAAGAACCGCACACTATCCAGCAGGACATGCTGTGTGCTGGCTATGTGAAGGGAGGCAAGGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030800:ENSMUST00000032988:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.4=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACCTTCTCCCGCTACAT
R:
TTTCCCGGCTGATGAGTGGTA
Band lengths:
170-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types