HsaINT0133079 @ hg38
Intron Retention
Gene
ENSG00000196415 | PRTN3
Description
proteinase 3 [Source:HGNC Symbol;Acc:HGNC:9495]
Coordinates
chr19:843461-844034:+
Coord C1 exon
chr19:843461-843626
Coord A exon
chr19:843627-843892
Coord C2 exon
chr19:843893-844034
Length
266 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGC
5' ss Score
5.03
3' ss Seq
TGACCACCCCACCCCCGCAGACC
3' ss Score
9.48
Exon sequences
Seq C1 exon
GTGCTGCCCGAGCTGCGGAGATCGTGGGCGGGCACGAGGCGCAGCCACACTCCCGGCCCTACATGGCCTCCCTGCAGATGCGGGGGAACCCGGGCAGCCACTTCTGCGGAGGCACCTTGATCCACCCCAGCTTCGTGCTGACGGCCGCGCACTGCCTGCGGGACAT
Seq A exon
GTGAGCGGCCGCCTCCACACCCCTGTCCGCCCGCCCCGCCCTCTTCCTCCAGCCCTGGCCCGGCCACTGTCCCTCTGCCCGGGGAGGACCCAGCTAAGCCCCGTCTGCAGACCCCAGGCCCCGCGCGCGTGGGCAGTTCTGGGGGGAGGCCCGGGGCAGGGTCGCCGAGGGAGGGGTCTGGGGCTGCACCGCGGCCTCGGGAAGGGCCGGCTGTGGGCGGCGGCGAGTGTCCAGGGCGCCGAGGAGTGACCACCCCACCCCCGCAG
Seq C2 exon
ACCCCAGCGCCTGGTGAACGTGGTGCTCGGAGCCCACAACGTGCGGACGCAGGAGCCCACCCAGCAGCACTTCTCGGTGGCTCAGGTGTTTCTGAACAACTACGACGCGGAGAACAAACTGAACGACGTTCTCCTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196415:ENST00000234347:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(22.2=85.7)
A:
NA
C2:
PF0008921=Trypsin=FE(21.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCGGAGATCGTGG
R:
GGATGAGGAGAACGTCGTTCA
Band lengths:
297-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development