RnoINT0118868 @ rn6
Intron Retention
Gene
ENSRNOG00000029814 | Prtn3
Description
proteinase 3 [Source:RGD Symbol;Acc:1304898]
Coordinates
chr7:12645366-12646224:-
Coord C1 exon
chr7:12646059-12646224
Coord A exon
chr7:12645508-12646058
Coord C2 exon
chr7:12645366-12645507
Length
551 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TCCCACAACTGTAACCGCAGCTC
3' ss Score
3.18
Exon sequences
Seq C1 exon
GTGCAGTCCAGGCCTCCAAGATAGTGGGTGGGCACGAGGCTCGGCCCCATTCTCGGCCTTATGTGGCATCCCTGCAGCTGAGCAGGTCCCCTGGGAGCCACTTCTGTGGTGGCACGCTGATCCACCCGAGATTCGTGCTGACAGCTGCCCACTGCCTGCAGGACAT
Seq A exon
GTGAGTGCAGGGGACAGCGAGGGCATGGCAGGTCTGAAATGACAGCACAGCCCTGGCAGGATGCCTCATAGTCTCTTCCTTTTCCAACATCTCCCTCTGTACCTGCCTCAGCTACTCCCAATGTCTTCTCCAGATGACCTCAACAGTGCTTTTCTCTCACATAGAATCCACAGTGCCCCCACCCGCACTGAGGGAGCTAGGGGTATGGTTAGGGGTAAAGACACCCCATAGACTCCCCCAGTGAGGGGCTGTGGGCGTGGTCAGGGTGGAACCCCACTTAGAATCCCCCAGTGAGGGGCTGAGGACATGGTCAGGGTGGAGCCCCTGCCTAGACTCCCCTAGTGAGGGACTGGGAGGTGGTTAGGGTGAAGCCCTGCCTAGAATCCCCCAGTGAGGGGCTGGGGCGTGGTCGGGGTGAAGCCCCGCCTAGAATCCCCCCCAGGGAGGAGTTGGAAGCGTGGTCAGGGGATAGAGTACTTGGTAACATGTTGGAGGATCAGGGTTCCATCCCTTTCCCTGCAACAAACAAAATCCCACAACTGTAACCGCAG
Seq C2 exon
CTCCTGGCAGCTTGTGACAGTGGTGCTGGGTGCCCACGACCTGCTGAGCTCGGAGCCTGAGCAGCAGAAGTTCACTATCACTCAGGTCTTCGAGAACAATTACAACCCCGAGGAGACCCTCAATGATGTGCTTCTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029814:ENSRNOT00000014687:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(22.2=85.7)
A:
NA
C2:
PF0008921=Trypsin=FE(21.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCCAGGCCTCCAAGATA
R:
AGGAGAAGCACATCATTGAGGG
Band lengths:
302-853
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]