HsaINT0135690 @ hg19
Intron Retention
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9353488-9353943:-
Coord C1 exon
chr12:9353923-9353943
Coord A exon
chr12:9353657-9353922
Coord C2 exon
chr12:9353488-9353656
Length
266 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TGTTTCTTGTTTCCCTTCAGAAC
3' ss Score
12.01
Exon sequences
Seq C1 exon
ATTCCACTGATATACCTTGAG
Seq A exon
GTAAGTATCAGAAAAAGTATCTTATAAGGAAATTAGTGCTTTTAGAGAGTAGGAGGTTCTGATAATACTCTAGACAGATGAACTACTTTAAAAATTTTCAGATCTGAATTCCTCCTACTCCCAGTTGTCAGGTTGATTGTATTTTCTCTTCCTTCTGTATTTGTCTTTCCAGAGGCAATGCTAATTATCACCTTCAAAATCATTTGAGTTGCTCAAGGACTATTGTGACTAAATGATTACCGCCCATGTTTCTTGTTTCCCTTCAG
Seq C2 exon
AACCCAAGAAGAAATCGAATTGCACAATGGCAGAGTCTCAAGCTAGAAGCTGGCATCAATCAGTTGTCCTTTCCCCTCTCATCAGAGCCCATTCAGGGCTCCTACAGGGTGGTGGTACAGACAGAATCAGGTGGAAGGATACAGCACCCCTTCACCGTGGAGGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-PZP:NM_002864:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(6.4=100),PF077039=A2M_N_2=FE(4.9=100)
A:
NA
C2:
PF0183514=A2M_N=PD(55.3=91.2),PF077039=A2M_N_2=FE(45.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)