GgaINT0103683 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79338808-79339314:+
Coord C1 exon
chr1:79338808-79338828
Coord A exon
chr1:79338829-79339145
Coord C2 exon
chr1:79339146-79339314
Length
317 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TGTGGTCTCATTATCTGCAGGAC
3' ss Score
10.03
Exon sequences
Seq C1 exon
CTTCCGCTGGTCTATATTGAG
Seq A exon
GTATGTATCTACATTAAATTCATGTTCAGATCTATCATACTTCCCAGTTGCCTTAAGATGATTCTTATCTATTTAATTTATACAGCATATTTATTCAAACACATAAAGTTTTAACTTGTATTATGATACCTATAGCCTAGGGCTCATTTTGTTGTCCAGCCCTGAACTCCCCAAACAATCCTGCTATTTCTGCCCTGAACCCTCCTTTGAAACTGTGGTTGTGCCTACCCTCACTACTTCTGCTAGTGCTTTTTAGTTAGTTATTATTGCAGCCTCACACTGTTCTTACAATCTCTTTGTGGTCTCATTATCTGCAG
Seq C2 exon
GACCCAAAGAAAAACCGTTTGTACCAGTGGACAAAGGCTGAGTTAAAGGAAGGGTTAATCCAGCTCTCTTTCAACCTCACTACTGAGCCCATTCAAGGGACTTACGCAGTGGTGGCACAGAAGGCTTTTGGGAAGACAATCCATCATCCCTTCTCTGTGGAGGAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(6.4=100)
A:
NA
C2:
PF0183514=A2M_N=PD(55.3=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]