HsaINT0136373 @ hg19
Intron Retention
Gene
ENSG00000136933 | RABEPK
Description
Rab9 effector protein with kelch motifs [Source:HGNC Symbol;Acc:16896]
Coordinates
chr9:127969843-127975801:+
Coord C1 exon
chr9:127969843-127970000
Coord A exon
chr9:127970001-127975648
Coord C2 exon
chr9:127975649-127975801
Length
5648 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CTGGGTGAAATGTTTTCCAGGAA
3' ss Score
6.69
Exon sequences
Seq C1 exon
GTACACCTTGACTGTCCCTGGAGACAGCCCCTGTGCTCGAGTTGGCCACAGCTGTTCATATTTACCCCCAGTTGGTAATGCCAAGAGAGGGAAGGTCTTCATTGTTGGGGGAGCAAATCCAAACAGAAGCTTCTCAGACGTGCACACCATGGATCTGG
Seq A exon
GTAAGATCAGCAGCTGCAGAGTACATGCCCTATGGCCAGAGAACAGGGCTGTGTGCTGCTAGCCATGAGCAGGGCATTCCTAAAAACACCAGCAGGGTTTTCCTATAAGAAAACATGGCCAGGACCAGGTGTGGTGGCTCACGCCTCTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTTAGAGTTCGAGACCAGCCTGACCAATATGATGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGTGTGGTAGTGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGACAGGAGAATTACTTTGAACTGGGGAGATGGAAGTTAAAGTAAGCCAGGATCATGCCACTGTACTCCGGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAGAAAAAAGAAAAAGTCAGCATCACTGACAGATCCCTCAGGTTTCTTAGTAGGCCCCTGGCACACATTCATCTGACCAGTACCTCCTTGTTTAGCGGGAGAGAACCCTTATGGAGCCCTGGTTGTCCAGCCATTTATTCATCAAATATTTCTGTAGGATACATTGATGACTACCACCACTCATTCTATTCACATATCCAATATATCACTAAGCCCTACATATCTCTTTTCTTTGTTTTTTGTTTTTGTTTTTTTGAGATGGAGTTTCGCTCTTATTGCCCAGGCTGGAGTGCAATGGCGCGATCTTCACTCATTGCAACCTCTGCCTCCCAGGTTCAAGAGATTCTCCTGCCTCAGCCTCCCCAAGTACTTGGGATTACAGGCATGTGCCACCATGCCCAGCTAATTTTTTTTTTTTTTAGACGGAGTCCCACTCTGTTGCCAAGGCTGGAGTGCAGTGGCACGACCTCAGCTGACCGCAACCTGTGCCTTCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGAAGCTGGGATTACAGGCGCCCACCACTACACCCAGCTAATCTTTTGTATTTTTAGTAGAGACTGAGTTTCACCATGTTGGCCAGGATGGTCTCGAACTCCAGACCTCATGATTCACCCTTCTTGGCCTCCCAAAGTGCTGGGATTACAGGTATGAGCCACCACGCCCAGCCTACATATCTCTTATCTTTATCCATGTCTGTCCATTTCCACTACTACTACTGTAGTCCAAGCCACTGTTATCTCTCAACTAGACTTACAAGAGCCTCCTCACCAGCCTCCCTGCTTCCAAGTTTACCCCCTATACAGTGCATTTTCTCTACCTAGCCAGCGAATATCATCTAAAATACAAATCTAACCATGTCACTCCCTATTTCAGACTTTTCTCAACCTCCCTTTTTTTTTTTTTTTTTTGAGACCAAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCTGCAAACTCGGCTTACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTAAATAGCTGGGATTACAGGTGTGCGCCACCATGCCCTGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACGATGTTGATCAGGCTGGTCTTCAAATCCTGACCTGGTGATCCTCCCGCCTCATCCTCCCAAAGTGCTGGGATTATGCATGTGAGTCACCACACCAGCCTTTTTTTTTTGAGGCAGCGTGTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCTGCCTACTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGATTACAGGCGCGTGCCACCAGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTTCTGACCTCAAGTGATCTGCTTGCATCAGTCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGAGCCCGGCCCCAACCTCATTTCTTGGCTCTCTCCAACCCACATTTGCTGCACTGGATATCCTTCAGTTCCTTGAACACAGCTTGAGCTCTCTGGCCTCCATGCCTTTGCACACACAGATCCCTCTGCTAGGAATGTTTTTCCCTTTTCTTATCATCTGGCTTCTCTATATCTTTCAGATTTCAGATTAAATGTCACTTCTACCAGGAACCTTTCCTGTTACCTCTGGACTCGTTCAGGCACTACATGACTCTGTATGTCCGTAGTCTCATGTGCTCTTCCATCCTGTCTGCCTTCACAGCCCTATCACATGTGATTGTTTCTTGTCCGTCTGCCCCACAAGAACATAAGCTCCTCAGAAACAGATAGCATATTTTCCTCATCATTGTATCCCAGACACTACCACAGGGCTTAGTACAGAGTGGGTGCTCTATAAGTATTTAAATGAATGAATGAATGAACCTGCTAATAAGAAACAATTGGATCTGGGCGCAGTGGCTCACGCCTCTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCGCTAGGTCAAGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGGGCACCTATAGTCCCAGCTACTCGGGGAGGCTGAGGCAGGAGAATGGCGTGAATCCGGGAGGCGGAGCTTGCAGTGAGTGGAGATCGTGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGTCTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGGAAATGATTATTAGCTGGGCGTGGTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAAATCACAAGGTCAGGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCTGGGCATGATGGCTTGTGCCCGTAGTCCCAGCTGAGGCAGGAGAATTGCTTGCATCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATTATGCCACTGCACTCCAGTCTGGCAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAGAAAATAAAAGAAACGATTATTCTTTGCTCTACACAAGGGCAGAAGTTGAACAATGGTGACCCACTTACGTATTTTGTTAGGTCCATGTAACATTTCCCTATTGTTTTAATCTTAAGTTTTGTTTTTTTTTTTGAAATGGAGTCTCAAACTGTCACCCAGGCTGGAGTGCAGAGGCACGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTAAAGTGATTCTCCTGGGCCGGGCATGGTGGCTCACCATGCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACGGTGAAAACCCATCTCTACTAAAAATAAAAAAAAAAATTAGCCAGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGATAGGGCGAGACGCCATCTCAAAAAAAAAAGAAAGTGATTCTCCTGCCTCATACTCCCAAGTAGCTGGAACTACAGGCACGTGCCACCATGCCCCGCTAATTTTTGTATTTTTAGTAGAGATGGGTTTTCACCATGTTGGCCAGGAGGGTCTTGAACTCCTAACCTCAAGTGATCCACCCACCTCGGCCTCCCCAAGTGCTGGGATTACATGCGTGAGCCACCACGCCCAGCATAATCTTAAATTGTTTACCAACCAATTATGCAGAAATCTACATATAAAAATTTAAATGGTTTGGCTTCTCTTGATAATGTTGGAAAATCTAATGTCAGTAGGCCTCCCTGTCTACATGGCAACAATTATTTGGAACTGAGCTGCCACCTATCAAGAGGGCTCTTATTCTCCAGTTTGCCACAGTTTTTGTTACTCCCACCTAGGCATTTGAATTTCTACTCCCTGCACTAAAAAAATCAAAGGTAGGCTGGACGAGGTGTAATCCCCCAGCACCTTGGGAGGCCAAGGCGGGTGGGTCACTTGAGGTCAGGAGTTTGAGGCCAGCCCGGCCAATATGGTGAAACCCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCATAGTAGCTCACACTTTTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCGCGCCAGTGCGCTCCAGCCTGGGCAACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAATTCAAAGGTAAATTAAATCACTTCTAGCCCTCAATTACATTAAATTAGTTCAACTTACATCTTTATTGCAACCTATTAATAGCTTTGTGACCCTGGCTACACCATCTCAACCATCTGGACCTCAGTGCTCTATAAAGTAGGGATAATAACTTGCTTCAGATCTAACAAGATAATGCCTGTAAAGGTCTTGTGTAATTGGTTAACCAAGTAAAATAATTGTTAATAATAAAGGTTAGGGTTTTTTGTTTGTTTGTTTGTTTTTTGAGACGGAGTCTTACTGTGTCACCCAGGCTGGAGCGCAATCTCAGCTCACTGCAAGCTCCACCTCCCGGGTTAATGCCATTCTCCTGCCTCAGCCTCCCAAGCAGCTGGGACTACAGGCGCCTGCCATCGCGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTAGCCAGGATGGTCTTGATCTCCTGACCTCATGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACAGCGCCTGACCAAGGTTAGGTATTACTATTCTGTGAACTTGTCTTAGCCAGCCATCATTTATTTGCAAGTAACAGAATCTCACTTAAACCAGAGGAAAAAGGGGGAATTTATTTAGTCAGATACAGGCGTGTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTGAGACAGAGTGTTGCTGTGTTCCCAGACTGGAGTACAGTGGCACAATCTTGGCTTGCTGCAACCTCCGCTTGGTTTACCAAGTAAAATAACCCTGGGTTCAAGCGAGTCCCCTACCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACGTGCCACTATGCTTGGCTAATTTTTTGTATTTTAGTAGAGATGAGGTTTCACCATGTTGGCCAGGATGGATTCGATCTCCTGACCTCGTGATCCGCCCACCTGGGCCTCCCAAAGTGCTCGGATTACAGGCGTGAGCCACTGCACCTGGCCAATACAGGCGTGTTTCAAAGAATTCAAGGACAGGAAGTAGAGCCCAGGATCATGAGAAAGTGGAAGCACTTGATCTGGTTGGCTCATTCTGGTTTCATTGGCTACCTTCAACCCAATCAGCTAAAGCTACAAAGTCAAAGCATAGTACAAACATGTCATCTGGGATCTATCCTTGTGGTTGACAAAGTGGGGACAGTTTCCATAGAACGGGGTCTATGGACTAGGCAGACAGCCCCCTAAGTATCTATTATAGAATTTTCTGGAGGTTGACAACATGCCCTTTAAGTGATTCAGTGGTTTTCATTTATGTTTATGGCCCTCTTCTCATGACCCTCCTCAAGTGTGCCAACCAATATAATAATTGGCAGCCCCAATCTAGGAACTGGGTGAAATGTTTTCCAG
Seq C2 exon
GAAAACACCAGTGGGACTTAGATACCTGCAAGGGCCTCTTGCCCCGGTATGAACATGCTAGCTTCATTCCCTCCTGCACACCTGACCGTATCTGGGTATTTGGAGGTGCCAACCAATCAGGAAATCGAAATTGTCTACAAGTCCTGAATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136933-RABEPK:NM_005833:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=NA C2=0.099
Domain overlap (PFAM):
C1:
PF0764610=Kelch_2=PU(78.8=75.9)
A:
NA
C2:
PF0764610=Kelch_2=PD(20.8=21.2),PF134151=Kelch_3=PU(46.9=44.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)