MmuINT0130764 @ mm10
Intron Retention
Gene
ENSMUSG00000070953 | Rabepk
Description
Rab9 effector protein with kelch motifs [Source:MGI Symbol;Acc:MGI:2139530]
Coordinates
chr2:34790503-34795329:-
Coord C1 exon
chr2:34795172-34795329
Coord A exon
chr2:34790656-34795171
Coord C2 exon
chr2:34790503-34790655
Length
4516 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
ATCGCATAAATGTTTTCTAGGAA
3' ss Score
6.76
Exon sequences
Seq C1 exon
GTACACTTTGACTTGCCCTGGAGACAGGCCCTGCCCTCGAGTTGGCCACAGCTGCTCATATTTCCCCCCAGTTGGTGATGCCGAGAGCGGGAAGATCTTCATTGTCGGGGGAGCAAATCCAAACCAAAGTTTCTCAGATGTACACACCATGGACTTGG
Seq A exon
GTAAGATCAGTGCTGTAGAGCATTCCTAAGAACACCAGCCCTACTGGGTATCGTGGTACAGTTCTTGTGAATTCTTGCATGATAGCCCCTGGGAGTTTGAAGCTAGCCTGGTCTATATAACAAGTTCCAGGCCAGGAAAACATAGACCCTGAACAACAACAACAATAGTAATGACTCTGAACCATAATAACAATAAGAACAACAACAGCAATAAAATGTCTTAGTTTGGGTTTTATAGCTGTGACCAAGGCAACTCTTCTAAAGGATGACATTTAATTGGGGCTGGCTTACAGCTTCAGTGTTTCAGTCCATTATCAAGGCAGGAAGCACAGCAGCATCCAGGCAGGCATGGCACTAGAGGAGCTGAGAATTCTACATCTTCATCCAAGGGAAGTCAGGAGCAGACTTGTCCTCAGGCAGCTAGGAGGAGGGTCTCAAAGCCTAGCCCCACAGTGACACACCTCCTCCACCAAGGCCACACCTCCTCCACCAAGGCCACACCTCCTCTACCAAGGCCACACCTCCTAATAATGCCACTCCCTGGGCCAAGCATATTTAAACTACCACAAATAATAATACCGACTCAGACCAGACAACAGAGTTTTCCTCTTAAAGAGAAGAATATATTTGTCCCTCCGATCTCAGCTGACCTTTAGCATCCTTGTTTGGAGAAGAGTCTGTGTCTTAGGGTTCCCATTGCTGTGAAAAGACACAATTACCATGGAAACTCTTATAAAGGCAACCATTTCATTGGGGCTGGCTTACCATTTCAGAGGTTTAGTCTGTTATCATCATGACAGGAAGCATGGCAGCATCCAAGTAGACATGATGCTGGAGGAGCTGAGAGTTCCACATCTTGATCCAAAGGCAGCCAGGAGGGGACTCCTTCCACATTGAGTGGAGCTTGAGCACTAGACACCCTCAAAGCCCACCTATACAGCGACACACTTCCTCCGAGTCCACACTGCCTAGTAGTACCACTTCCCATGGGCCAAGCGTATTCAAACCACCACAGTCTGTATTGAGCCCTGGCAATCCCGAAATTGGTTATGTATTAACAGTTAGGAGGCATCATTTCTCCTGCCCTCATTCTAATGAATGTCCTGGCTTTGACTGTCTCCCACTGTGTTTGTCCCTTTCCGTTCCCACCACAGGTCCCACCACTGCTGTCTTTTCACTAGCCCTGGAATCATTCTCCCTCTGGTCTGCTTGCCTCCATGTCAGCTCACTGCACAGTGCATGTCCCATACCCATGCAGAAAGTGTTGCTCTTTGGTTTGGACAAGGGTGGTTTTTTTTGTTTTGAAGCAGTCTCATGGGGCTGGGGCTGGACTTGAACTCACTGTGAGGCTGACAGCATGACCTTGAACTTCTGATTCTCTTGCCTTTACCTTTCAAGTATGTATCTGAGCCCCTTCACCTGGTCTATATGATGGTGCTGACCAGACCCTGCCTTTGTGTGTGTGAGGCCAGTGCTCCACCAGCTGAACTGCATCCATGTCCCCCAAGCCATCGCTCATGCTGTTCCCTTTGCATGAGGAGGTCCTCTCCTTCCTTGTCATCTCTCTGTGGTCCCTGACTCAGTGCCCCTTCTGTCTGGAAGCTAGCACTCCAGCTCTAGACTGGTTTGGATACCATATTCCTCCATATCCATAGAGTCATATACTCTCCCATTTCCTCCTTCCAAGATCTTAGTGCATCTGATTATTTCCTGTATGTCCCACAAGAGCTTAAGAGCCTTGGAGAAAGAGTGAGACTGTTTTACTCATAATTGTATCCCCAGCCACTGCTAGAGCATATATCCAGGGCAGGCACTTTATGTTTAGATGAATGAATGAATGAATGAATGAATGAATGAATGAACAAAGGAGCAAAGCTATGAATAAACTATTATGATGATGTGCTATATGCTGCTGTACAAAAGGCAGAAGTTGAAAATTGGTGACCACGTGAAAGTGTGGCCATATAACATTTCTGTTATACTATATGTATGTAAATATACTTATAAATATATAGGAATGTTTATATGTTAATAAATTATATATATGTATATATATGTATATATATATATATGTATATATATAAGTTTTTGAGACAGGGTGTTTCTCTATAGCCCTGGATGTCCTGGAACTTGATATGTAGATCAGAGTGGACTTAAACTCATAGAGATGCACTTGCCTCTGCCTCCCAGTATTAGGAGCTGGGATTAAAGATGCATGCAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAATTGCTCTTCCGAAGGTCAGGAGTTCAAATCCCAGCAATCACATGGTGGCTCACAATCATCCGTAATGAGATCTGACTCCCTCTTCTGGAGTGTCTGAGAACAGCTACAGTGTACTTACATATAAATAAATCTTAAAAAAAAAAAAAAAAAGATGCATGCCAACATCCCCTGTCCAGGTATTATTAATTTCTTCATTACATCTATTATTTTGTACATGTGCATAGTACACATGGAGATTAGAGGACAAAGCTGGCAATTTTTAAAAGATTTGGTTTTAGGGTTTTTTGTTTGTTTTTGTCTTTATTTTTGTTTTTTGAGCCAAAGTTTCTCTCTATAGCCTCAGCTGTCCTGGAACTTGCTCTGAGAACCAGGCTGGCCTTGGACTCAGAGATCCACCTGCCTCTACTTTTTTTTTTTTTAAATTTATTTATTGATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATTTAATTAGGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAATCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTGCCTCTACTTCTAGACTGCTGGTGTTAAAGGTGTGCATCACCACCTGGCAAGATTTGTTTTACTCTTTTTATTTATTTATTAAATTAGAGATGATTGGTCTAAAGAATTAGTATAAGAAATATCTTTTATGTGTATTAGTGTTGATCTCCATGTCTGCATGTGCACTGGGGAGGGAGTTGAATCCTTTGGAACTGGAGTTATAGAGAGCTGTGTGCCACCATGGTGCCAGGACCTGAGCCTGGGTATTGTAGTGCTGAGCTGTCACTCCAGCCCATTATTGTTTAATGTCTGTGGAGTATGTGCATGTGAGTGCCCGGGGTTGTGGAGGGGCAGAAGCATTCCATCCCCTAGATCTGGAGTTCCATACATGCTGGGAATTTCTGCAAGGTTCGAAAGTGCCCTTAACAGAGCCCCTCTCCTGCCCTGGTTATGTCCATTTTTATATGCACACTTGGTCTGTAAATAATTCAAGTTTGAAACAACAGAAATGAGGCTGGAGAGATGGTTCAGTGGGTAAAGGTTTCTGCTCCCAACGCTAATCTCAGTTTGTTTCCTAAGACCCACTTGGTGGAAAGGAAGAAACTAACTCTCAAAGTTGTTCTCTAACCTCCACACAGGAGCTGTGACACAAATGTACACACAAATACACACAAACACACAGAAACACGCACACACAGAATAAATAGAATGTAATTAGAACATTTTTAATTGCCGTAGTTGGGCTTCTCATGATAATTTTCAGAGCATCAATACTCTTGCATAGGTACATCACAATCATTTAGACCTGGGGTGTCACCTCTCGCTGAGGCTCCCAGCCACAGTTACCACAGACTCTTGTTTATACTGTCCAGATACTTGAAACTCTACTCCCAGCATGAGGCAAAAAAAGATGCCTTGACTCTTTTAGATACCAAGGAGCTTCCCTTCCAGCTCAGTTATGTCACGTCTGTCTGTCAGTCCATCCTAGCCTCCAGTTCTCTATGTAGCCCAGACTGGCTTCATACTCACAGTCCTTCTGCCTCCACTTTCCATGTTTTGGGATCCTGGACTTGTGCCACCATGCCAGCAGCTATCAAGTGCCATAGTGACCTTAGCAAGGCCATCTGAACCCCAGTAGCCTATTAAATAGAGGTACTAACCAGCTTCATTTACAGTTTTGATTAGCTAACAGTGTGATGCCTGTAAGGTCCTACATTCGTGACTTGCTAACTAAAAGGATGAGCTAGTTTTGGCATTGTTACTCTATTTGCCCAGAGATTTGTTAAGGAGGGGGTGGGGGGAGGAAGGGAGGGAGGGAGATTTCATAGAATCCAGGAGTGTTCTGCAGAATCTAAAAACAAAAAGTCGTAGCCCACACTGATGAGAGTGGAAACTAGATCCAAGTGGCCCGTGTCAGCCAAGTCCCATTAGTTACAAGTAGAAAGTTAGTGTCAGACATATGTCACTGGACTCTGAACGGGGAAGAAGAGACAGTTTCCATGAAAGAGGTACATGGACCAGGTAGACAGCCTGCAGGCGTGCACTAGAGACCACATCAGAGTTTGATCCTGCTCCCTTTGTGGTTGGTTGCTTATGATTTTGCCTCTTTCCACTGCCCTGGTAATCCAACCAGAATTACCAGCTGACAGCCCTAATCTAAGGATCGCATAAATGTTTTCTAG
Seq C2 exon
GAACACACCAGTGGGACACGGCCACCAGGGAGGGCCTCTTGCCTCGGTACGAGCATGCCAGCTTCCTTCCCTCCTGCTCTCCTCACAGCATCTGGGTGTTTGGAGGTGCAGACCAGTCAGGAAATCGAAACTGTCTGCAAGTCATGAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070953:ENSMUST00000145903:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.236 A=NA C2=0.340
Domain overlap (PFAM):
C1:
PF0764610=Kelch_2=PU(85.1=88.9)
A:
NA
C2:
PF0764610=Kelch_2=PD(20.8=21.2),PF134151=Kelch_3=PU(46.9=44.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types