RnoINT0123387 @ rn6
Intron Retention
Gene
ENSRNOG00000018591 | Rabepk
Description
Rab9 effector protein with kelch motifs [Source:RGD Symbol;Acc:1310612]
Coordinates
chr3:13855895-13859903:-
Coord C1 exon
chr3:13859746-13859903
Coord A exon
chr3:13856048-13859745
Coord C2 exon
chr3:13855895-13856047
Length
3698 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
ACCGAGTAAATGTTTTCTAGGAA
3' ss Score
5.02
Exon sequences
Seq C1 exon
GTACACTCTGACTTGCCCTGGAGACAAGCCCTGCCCTCGAGTTGGCCACAGCTGCTCGTATTTTCCCCCAGTTGGCGAGGCCGAGAAAGGGAAGGTCTTCATTGTCGGGGGAGCAAATCCAAACCAAAGCTTCTCAGATGTACACACCATGGATTTGG
Seq A exon
GTAAGATTAATGCTACAGAACATTGCTAAAACCACCGGCTCTGCTGGGTAGAGTGGTACATACATACCTTGTGAATACTAGAACCGGAGAGGCAGAGGCATGACAACCCCTGGAGTTCCAAGCCAGCCGGGTCTATATAACAAGTTCCTGGCCAGGAAAACAGACCAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGACAACAGCAATAAAATAATGTCTTAGTTTGGGTTTTATAGCTGTGATCAAGGTAGCTCTTATAAAGGACAACGTTTAATTGGGGCTGTCTTACAGGAGGAAGGTCTCAAAGCCCATCCCCACAGTGACACACTTTCTCCAACGAGGCCACACCTCCTAATAGTGCCATTTCCCATGGGCCAAGCATATTCAGACCACCACAGTCTGTATTGAGCCCTGGAACCCTGAAATTGGTTATTTATTAACTGTTAGGAGGCCACATTCTAATGAATCAGGTCCTGACTTTCTGTCTTCTACTGTGTTTGTGTCTCTCCGTCCCCACCACAGTTCCCACCACTGCGGTCTCTCCACTAGCCCTGGAACCATTCTCACTCTGGTCTCCGTCCTTCCATGTCGGCTCACTACACAGTGCATGTCCCGTACCCGTGCAGAAAGTGTTGCTCTTTGGTTTGGACAGGGCTGGTTTTTTTTGTTTTGAAGCAGTCTCATGTGGTTCAGGCTGGACTTGAACTCACTGTGAGGCTGAGAGCATGACCTGGAACTTCTGGTTCTCTTGCCTTTACCTTCCAAGTGAGCATCTGAGCCCCTTCACCTGGTCTGTGGGATGCTGCTGAGCAGACCCTGGCTTTCCTGTATGCGAGGCCAATGCTCTACCAGCCAAGCTCCATCTGTATCCTGTCGTTCTCTCCAAGCCATTGCTCTGCTGTTCCCTCTGCGTGAGAGGCTCCTCTCCTTCCTCGTCCTCTCTCTGTGGTCCCTGATTCAGTGTCCCTTCTGTCAGGAAGCTTGCTCTCTCCAGCCTTAGACACTTTGGACACTATATTCCTCCGTCTCCATAGCGTCTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAGTCCCCAGCCCCTGCATAGCGTCTTATACTCTCCCATTTCCTCCTCCCAAGATCTCAGTGCGTATGATTATCTCCTGTACTTCCTACAAGAGACAGAGTGAGGCTGTTTTCCTCATAATTGTTTCCCTAGCAGTCACTAGAGCATCTAGCCAGAGCAGGCATTTTGATTTAGATAAATGAATGAACGAATGAATGAATGAATGAATGAATGAATGAACAAGCTATTAAGGTGTGCTATACTGCTACACAAAAGCCAGTCGTTGAAAATTGGTAAGTTTAGTCATGTAGCATTTCTGTCATATATGTAAATATATATTCATAATATATAGAAATGTTTATATGTGTACAATAAATTATATATATAGTTTTTTGAGACAGGGTTTCTCTCTATAGCCCTGGCTGTCCTGGAACTTGCTCTGAGAACCAGGTTGGCCGTGAACTCAGAAATCCACCTGGCCTAAAGAATTGTTTTAAGAAATATATTTTACTGGTGTTAGTGTTTACGTACGTGGGTACGTGTCTGCAAGTGTGTTGTGAAGGGAGGCAGGTCCTTTGGAACTGGAGTTACAGAGAGCCGTGCACCACCATGGTGCCAGGACCTGAGCCTGGGCATTCTACCTGCTGGGCCATCACTCCAGCCCATTTCTCTATTGTTGTGTAATGTCTATGGAGTATATGCGTTTGAGTGCCTCGTCCATGGAGGGGCGGAAGCATGCCGTCCCCTAGAGCTGGAGTTTCTTCTGAGCTGGGAATTTCTACAAGATTAGCAAGTGCCCTTCACAGAGCCCCTTTCTCGCCCACCCCAGCTGTGTCCTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATCTTTTTTTTTTTTATTTATTCATTTATTATATATAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGCATCAGATCTCTTTACAGATGGTTGTGAGCCATCATGTGGTTGCTGGGAATTGAACTCATGACCTCAGGAAGAGCAGTCGGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCAGCTGTGTCCTTTTTCATATGCACACTTGGTCTGTAATTCAAGTTTGATACAACAGAAATGAGGCTGGAGAGATGGTACAGTGGGAAAGGTTACTGCTTCCAACACTAACCTCAGTTTGTGTCCTGAGACCGGCTTGGTAAAAGGAAGAAACTAACTGTCCAAGTTGTTCTCTGACTTCCACGAAGGAGCTGTGGCACAAATGTGTATACACACACACACACACACACACACACACACACGTGTGCGCACACACAAATAGAATGTAATTAGAAAATTTTTAATTGCCATAGTTGGGCTTCTCATGATAAGTTTTGGAAGTCTAACATCAATATTCCTGCATGACTATATGACAGTCACTTAGACATGTAGCGTCACCTCCTGATGAGAGCCCCACCTACAGAGTCACCACTCTCCTGTTTATACTGTCCAGACACTTGAATCTCTACTCCCAGCATGAGGCAAACAAAGATACCTTGACTCTCTTTCAGATGTCAAGGAGTTTACCTTCTAGCTCAGTTACATCATGTCTGTCTATCTGTCTGAGTCTGTGACAGCATCTTCCTATGCAGTGCATTATAGCCTAGAGTTCTCTGTGTAGCCCAGACTGGCTTCACTCTCACAGTCCTTCTGCCTCCACTTTCCACGTCCTGGGATCCTGGACTTGTGCCACCATGCCAACCTCCATCTCATCGTTACTGTAAGTTAGTGCCACAGCGACCTCGGCAAGGCCACCTGCACCACGGTATCCTATTAAATAGAGGCAGGGGCTGGGGATTTAGCTCAATGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAATAGAGGCACTAACCGGCTTCGTTGGCGGCTTTGACTGGCTGGCAGCGTGATGCCGGTAAGGTCCTACATTTGTGGCTTGCTGACTAAGGGAATTAGTTGGTTTTGACGTCATTACTCCATGTGCCAGAGATTAGTTAAGAGAGTTAAGGGAGGGAATTTATTGATTCTTGGAGTCTGCAGAATCCAAGGCCAGTGAGAGTGGAAACTGGATCCAAGTGGCCTGTCAGCCAAACCCCATTCATTACAAGTAGAAAGTTAGTGTCATACATATGTCACCTGTATGGGGAAGAATAGAGGCAGTTTCCATGAAAGAGGTTCATGGACCAGGTAGACAGCCTGCAAGCGTGCACTAGAGAACACGTCTCTCACAGGAGTTTGATCCTACTTTCTTTATGGTTGGTCACTTCTGTGTTTGGGGGGTTTTTTGTTTGTTTGTTTTTTTCTTCTTTTTCTTTTTTTCGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAGATCCCCAACCAGGTTGGTCACTTCTGATTTTGCCCTTGTCTCCACTACCCTGGCAATCCAACCAGAATTACCAGCTGACAGCCCCAGTCTAAGGACCGAGTAAATGTTTTCTAG
Seq C2 exon
GAACACACCGGTGGGACACGGCCACCAGGGAGGGCCTCTTGCCTCGGTATGAGCATGCCAGCTTCCTTCCATCCTGCTCTCCTCACAGTATCTGGGTGTTTGGAGGTGCAGACCAGTCAGGAAATCGAAACTGTCTACAAGTCATGAATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018591:ENSRNOT00000025194:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.269
Domain overlap (PFAM):
C1:
PF0764610=Kelch_2=PU(77.4=75.9)
A:
NA
C2:
PF0764610=Kelch_2=PD(20.8=21.2),PF134151=Kelch_3=PU(46.9=44.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]