HsaINT0137010 @ hg19
Intron Retention
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:9842]
Coordinates
chr9:135983375-135984253:-
Coord C1 exon
chr9:135984060-135984253
Coord A exon
chr9:135983794-135984059
Coord C2 exon
chr9:135983375-135983793
Length
266 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
GAACTTTTCTCCTCTTGCAGCTC
3' ss Score
10.45
Exon sequences
Seq C1 exon
TGCCATCTCCTCCATCCTGGGCACCTGGCTGGACCAGTACTCGGAGGATTTCTGTCAACCTCCGGACTTTCCCTGCCTCAAGCAGCTGGTGGCCTACGTGCAGCTCAACATGCCAGGCTCAGACCTGGAGCGCCGTGCCCACCTTCTCCTGGCCCAGCTGGAGCACTCGGAACCCATTGAGGCAGAGCCTGAGG
Seq A exon
GTGAGGAGGACTGGGGTGGGTGCCAGAGGGTGAATGAGGAGGGGTCGGTGCTGGGCCACACGAAGAGGAGGCTCCAGGGTCTGGTGCTGGGTCAGGGGCCCAGATGAGCCTCAGACCACACAGGCAGGGACCACAGGCAGGAGAGTGGCCTGGTACACGTTTTGTGGGTTCGGGGAGAGAGGCTTCTCTGGAAGCCGGGGCTGTTCTGTGTCTTTGGAAAGGCACAGGAAAGGCTGGCATGTTGTTGAACTTTTCTCCTCTTGCAG
Seq C2 exon
CTCTGTCACCAGTGCCAGCTCTAAAACCAACTCCAGAGCTCGAGCTAGCTCTAACACCAGCTCGAGCACCCAGCCCAGTGCCGGCTCCAGCCCCGGAGCCAGAGCCAGCTCCAACACCAGCTCCAGGTTCAGAGCTAGAAGTAGCTCCAGCACCAGCTCCGGAGCTCCAGCAGGCTCCAGAGCCAGCTGTGGGACTAGAATCGGCTCCAGCGCCAGCTCTGGAACTAGAGCCAGCTCCAGAACAGGATCCAGCTCCCTCACAAACTCTAGAGCTGGAGCCAGCTCCAGCACCAGTTCCATCATTACAGCCTTCCTGGCCTTCACCTGTGGTTGCAGAGAACGGGCTGAGTGAGGAGAAGCCTCACCTCTTGGTGTTCCCTCCAGATCTGGTGGCAGAGCAGTTTACACTGATGGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271-RALGDS:NM_006266:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=NA C2=0.849
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(31.7=48.5)
A:
NA
C2:
PF0061714=RasGEF=PU(10.0=11.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACTCGGAACCCATTGAG
R:
GAGGGAGCTGGATCCTGTTCT
Band lengths:
293-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)