HsaINT0137014 @ hg19
Intron Retention
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:9842]
Coordinates
chr9:135979650-135981403:-
Coord C1 exon
chr9:135981319-135981403
Coord A exon
chr9:135979719-135981318
Coord C2 exon
chr9:135979650-135979718
Length
1600 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGAG
5' ss Score
1.51
3' ss Seq
CCTGTCCTCTACCCTGGCAGGAG
3' ss Score
8.77
Exon sequences
Seq C1 exon
GGACAGTTTCCGGATCTTTCAGAAGCTGTCAGAGATCTTCTCAGATGAGAACAACTACTCATTGAGCCGGGAGCTGCTCATCAAG
Seq A exon
GTGGAGTGGCGGCAGGCTGGGGCGGGGGCTGGGGCGGGGGCTGGGGCGGGGGCTGGGGCGGGGGCTGGGGCTGGGGCGGGGGCTGGGGCGGGGGCTGGGGCGGGGGCTGGGGCGGCGGGCGGTGGCATTCGCTTCTTGCTGGGAAAGTTCCTTTCCCGTGTGCGTGAAGGGGGAAGAGGGATCTGTTTGGCCCCTGGGTGTTTGAGGGACAGGGCCCCAGTTAATTGGACACAGTAAGGGTAGCAGTGGAGGTTCCAGGAGGAGTAGATGGGCATCAGGACCAGCAGGCCTCTGGCTTCCTCGCCGGTCCCTCCTGCTGGGTGGGAAGGGGATGCGGCTCCTGCCCCCACACCGGCCCAGTCTGTCCCCGGGAGGCCAGGCTCCTGACGCTACCTCTGTCTGCTCTACACACCCAAGGAGAGGGCAGCCTGCCTACCCCAGGGACAGGAGCTGCAGGGGATGCCAGGGGCCAGGTGGCCAGACCTGGGAGGCAGATTTGGAGGCCCCATGTGGCTTCCCTACCCTGCCCCGAGAAGAGACACTGACCAGAGAACCCTGTAGAATTCTTCCCATGGCACCCCATTAGCTGTGGCGGATACCCCAGATGACTGAGGAGAACTTTCAGTGACTAATGGATTCACGAGGCCTCAGAGGGAGTCAAGTGTCACTGCCTGGTGCCCCTGGCATACCCGGTCAGTGAAATGGCATCTAGGGCCCCCCTCCTGCGTGGACACACACAGAGTTCCCTACAGGGGAGCATCGCAGGGGGCTCCTGGGACACCTGTCCCTCTCCCTCCGTGGCACAGCTCCACTGGGGGCCCTGGCATGCACGAGAAGCCCAGAGGACGGTACCCTGATCAGTGACCAAACGGGTAAAGGCAGATGGGGCAGAGCCTCTGGCTAGGACAGAAGAGCCTGTTCTGAGTCCCTGGGGGGCCCAGGGCAAGTCACTGCCCATCTCAGGGCCATAGTTTCCTCATCTAGAAAATGGAGGAATGCCAGCCCTGGGGTGCTGACCTTATGGAAGGTTCAAGGGAGAAAGGAGTGTGCAGCCATAACAGGACTGTAGCGCAGAGTCTCTGAGGCCCTGCGAGGCAGGTGGAGTTTTTTTATTTGTTTAGAGAAGGAGTCTCGCTCTGTCTCCCAGGCTGGAGTGCAATGGCGTGATCTCGGCTCACTGCAATCCCCACCTCCTGGGTTCAAGGGATTCTCCTGCCTCAGCTTCCCAAGTAGCTGGGATTATAGGTGTGCACCACCAACCCAGGTAATTTTTGTATTTTTTAGTAGAGATGGGGTTTCACTGTGTTGGCCAGGCTGGTCTTAAACTCCTGACCTCAAGTGATCCACCTGCCTTGGCCTTCCAAAATGCTGGGATTACAGGCGTGAGCCACCGCACCATGCAGCAGGCGGAGTTCTCATCCGCACTTTCCAGAGGGGGAGGCAGGCTCAGGAAGGCCAGGCCACCGGCCCAGGACCCCACACTAGTGAGTATTGATACAGGGTCAGCCCTGGAACCCGACCACACTGGCAGCACCCCAGGTCAGGGTGCCTGAGGGCTGAGGGGATAGGGCCTTGCTGACCCTGTCCTCTACCCTGGCAG
Seq C2 exon
GAGGGCACCTCCAAGTTTGCCACCCTGGAGATGAACCCCAAGAGAGCCCAGAAACGGCCGAAGGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271-RALGDS:NM_006266:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.507
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.0=100),PF139001=GVQW=PU(4.7=6.9)
A:
NA
C2:
PF0061714=RasGEF=FE(8.7=100),PF139001=GVQW=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)