HsaINT0137372 @ hg38
Intron Retention
Gene
ENSG00000079337 | RAPGEF3
Description
Rap guanine nucleotide exchange factor 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chr12:47739143-47740191:-
Coord C1 exon
chr12:47740141-47740191
Coord A exon
chr12:47739231-47740140
Coord C2 exon
chr12:47739143-47739230
Length
910 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AGTGTGGCTTCTTCCCCTAGGAT
3' ss Score
9.88
Exon sequences
Seq C1 exon
CGGCTGCCTCACAAAGTCCGGAAGCTGTACTCCGCCCTCGAGAGGCTGCTG
Seq A exon
GTGAGTGCTCCACCCTGCCCGGCCTGGCTCTGCTAGGATCAGCTGGGCTCGGCCCTGCCCTCCAGACACCCTCACTCTTGGCTTCCCTGCAGCCCCTCTACTCGTCCTTTGTCACTTTCAGGGTTCCCAACCTCGGCCCAGGGCCTAGCTCCAGCCTGTGAGTTTGGGGAGCTGGCTGAGGAAGGGGTGTTCAGCACTAGGATAGGGGTTGCACGGTGCATCCTGGCCCTCAGTGTGTGCATGGGGGCAGGAGATCCTGTGTGAAGACTGGGCTGGAGCATGTGGGTGTCCAGTCCTGGGGTCTGAGGTGCCAGGGCAGTGTCAGGGGCTCCAGAGCCCAAGGGCCTGGCATGGAGCGCCTGTGTGCACCAGGGCCTGTCTGCCCCTCAGGAACTCCGAGGGGCTTGCGGGCTAGACCAGTAGAAGAGGCGAGGATAGAGTTGGGGGTGGAACCTCCCACCTCCAGGAACTTTTGAGGATTTTGAGGGTTTTGACTATTCTGGAGAGAAGCAGAGAAGAGGTACTTCATCAGCATAGCCTGGGAGCTCTTGAGAGAAAATCCACCTCGTGGGGCTCAAGGGATTCAAAGGAGTTTACTCTGCAGAGAGAGAGAGGGAGGGACACAGAAAGAGACAGGGATAGAAAGGGACAGAGAGGTGACAGTGACAGACTTTTCCAAGAAACCTGGGGCCCCTGTGACTAACTGCTGTGAATTTTCTCAGTGCTAATGGGAGGTTGGAAGCCCCGTGTTCGCCTGTGACAGAGCCTGGGTGAGACCTGGGGCTGAGGAGAGGCTGAGTTGGGGCCTCTGCACCTGCTGTGGGATGGGCATGTGGCCCCTCCTTGGTTGGGTGGGGTCTGTGGTGGCTTATGGTGTGTGCAACCCCCTCAGTGTGGCTTCTTCCCCTAG
Seq C2 exon
GATCCCTCATGGAACCACCGGGTATACCGACTGGCCCTCGCCAAGCTCTCCCCTCCTGTCATCCCCTTCATGCCCCTTCTTCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079337:ENST00000449771:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(12.7=100)
A:
NA
C2:
PF0061714=RasGEF=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development