HsaINT0138082 @ hg38
Intron Retention
Gene
ENSG00000146587 | RBAK
Description
RB associated KRAB zinc finger [Source:HGNC Symbol;Acc:HGNC:17680]
Coordinates
chr7:5046255-5048091:+
Coord C1 exon
chr7:5046255-5046396
Coord A exon
chr7:5046397-5048032
Coord C2 exon
chr7:5048033-5048091
Length
1636 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
ACCTGCTTCTCCCCCTCTAGGTC
3' ss Score
13
Exon sequences
Seq C1 exon
GCCCGGCCCGGGCCCCTCGGGAGCAGAACAACCTTAGTGAGGTGGACAGGAGGGGACCTCGCGAGCAGACGCGCGCCAGCGACAGCAGCCCCGCCCCGGCCTCTCGGGAGCCGTGGGGCAGAGGCTGCGGAGCCCCAGAAGG
Seq A exon
GTAGGTCTTGGGTTTTCGGGCCCGGAGCGAGAAGGGCCTGAGTGAAGTCACCGTGTGTTGGGGACCTTAGAGTGTGGGGCAGGGGGAGGGTCTCGATCGCTTGCAGGAGAGACGTGTGTTTGGGTTTGAGGGCAGGGTCCGGCTGCACCGAACAGGCGCTGCATGGGAAATCTGGGAGGACGAGGCTTATGGGGGCCTGGAGGGTGTCACCAGCCTCAGCTGCGGACGTCGTCTCCACTCCCCGCTAACCCCTAACAGCCCTTCCTCCTCCTTTCCGTGCTCCAGATTTCGACCTCCTCTAAACGTCCGTCAGCGCCTCTGTTCTCTCATTTAAGTGTCTGCTGATTCCCCCCTTAGATCTGCCCTGGAGACTGGTAGTAATGCAGGAACAGTCTGCAGGGATTCTCTCTTGCTGCCTCAGTTGCTAGGGGAAGAGACTGGGCCTTAGCAGGTGGGTGACTTGACCGGGTCACTGGCTTTGTGGGTAGAGTTGCTCATAGTAGAACTCAGGAGTCTTATCTCCCAGGCCAGTGTTCTTTCTCCCGTATCCTAGTTTTCTTAATAGAAGATTATTAGGTGCAGCAATAACCAAGTTCAGTTAGATAATTTAGAAACAAAACCATATTTTATACACATTCATTTCATTTCTGAGAGCTCACATACTCAATTCCTATGGCTTCTTTGATTTTAAGCAGTTTAAAGAGACAATAAGAAAATGCGGGCCGGATGCAGTGGCTCACACCTGTAATCCCAGCACTTTGCGGGGGCTAAGGCAAGAGTATCCCTTGAGACCAGGAGTTAGAGACCAGCCTAGGCAACATAGGGAGACCCTGACTCTACAAAAAATACAAAAGTAGCCAGGCATGCTGGGATGCACCTGTGGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGGATCAATGGAGGCCAGGAGGTCGAGGCTGCAGTGAGCTGTGAATGCACCACTGCACTCCAGCCTGGGTGGCAGATTGAGACCCTGTCTCAACAAACAGACAAACCACAAAAAACATGAGCTGTATAATGGGAATTTTTTTTTTCTTTTTGCAGGTTGTATTTGATGATGGCAGACTATTTGTAAAAGGAGTCATGTTACCCATGAGAGTCTCACTCATCTGATTACTACCTGATTATCTTAGAGTTACAAAGTTACAAGTGCATGCTTCGCCTATCACTCTTTTTCACTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGTGTCTCTCACCCAGTCTGGAGTGCAGCAGTGTGGTCTCGGCTCACTGCAACCTCCACCTCCCAGGTTCAAAGGATTCTTGTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCATGTGACACTATGCCTGGCTAATTTTTTTGTTATTTTTAAGTAGAGATGGGGTTTCGCCATATTGGCCAAGGAAGGCGGATCACTTGAGGCCAGAATTCGAGACCAGCCTGGCCAACATGGCGAAACCCTGTATCACTCTTTTAGGCCCTTCTGAGTGTTTGCAGGCTGAGTGTTCACAGGGTGTTAGCCTATTGAGCTTTCTTTTGTGGTTCTTACGCAGGAGATTCCTGCCTTTGCAGGCCAGAGCACTCATGACTTCAGTGACCTGCTTCTCCCCCTCTAG
Seq C2 exon
GTCTACCAGCCACAGTCTCTGCACGTTTCCAAGAGCAGCAGAAAATGAACACATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146587:ENST00000353796:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGCAGAACAACCTTAGT
R:
GCAATGTGTTCATTTTCTGCTGC
Band lengths:
182-1818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains