MmuINT0132395 @ mm9
Intron Retention
Gene
ENSMUSG00000061898 | Rbak
Description
RB-associated KRAB repressor [Source:MGI Symbol;Acc:MGI:1927369]
Coordinates
chr5:143941165-143942422:-
Coord C1 exon
chr5:143942228-143942422
Coord A exon
chr5:143941322-143942227
Coord C2 exon
chr5:143941165-143941321
Length
906 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
CCTTCCTATCACCTCTGCAGTGT
3' ss Score
8.15
Exon sequences
Seq C1 exon
CTTCCTGCAGGTCTGGTGTGTCGAGGCTACCTTCCCTCCCGCAGCCTTTGCGTTCGCTAAGCTGGAGTTGCCGAGCCTGCAGGGCCGAGGCCGGAGCTTCCGGGGCGGCAGCGAACAGACTCGGCTGTGCGGGCTAGGGAGGCCTAGCGAGAGCTCGGCGCGGAGGCTGACAGGGGCAGCGGAGACGCCTGCTCG
Seq A exon
GTGAGGCCCGAGGGCGCAGAGCGATCGGGGCTGCGGGAGGGATGCTGGGCACAGATGGTGCCCAGTCAGTTCACCCGGGCACCCCGCTGTCCCCAGCTTGCGGCGCCTGGGAGGGTCGAGGTGGTCGGGCTGACAGCGGGACAGCTGCATCGCTTTGGGCTGCACGGTCAGTCCCGAGGACAGAGTGCAGGCACTGAAGAACTCAAGGGCTCCAGATTCCCACGGTGTCACTCAGCGTCCATCAGCTCTCTTGCTCTGTCTGTGGTCCCCCCCCCCCCCGAGTCTGCCCTTGAGGCATCGTAATGGTCTAGTGCTCAAAATCTGCTTTTACTTCTTTCTGCTCGTGAAGGAAGACTGAGTCTGCGACAGGTGTGAGACTTAATCAAGGTTGTGTTGAAATGAGTGCCATTGTTTTCTAGTTTCTTCCCTTAGTCCCTTTTTAAGATATGCAGCAGTAACCAAGTTTAGTTGGATAGTTTGAAAACAAACCACGCTTTATCCCTGTTTGTCGGACGTCTATCCATCTGGACCATTTTTCCTTTTTGTGTTTTAGTTTTTTTGAGGCGTGGATTCCTTGTGGCACATATTGTTCTGGTAGTGGGTGATCCTCCCGTCTCCGCCTCCAGAGAGTTGGGATTGCATGTATGTCACCTCATGGAACATGGATCCCAGATATATATATATATAGTGCCCAGAATCCTCATTCACTGTGACATATTTTGCAACAGTTTGAATAGGAAATAAAATAAGTACCCTTGTTTCCCCCACCTTTACACCAAATGCCCGTGGATAAAAAGAAGGCAGCGTAGTGTTCATCATAGAACTGTACCCGCCCCCCCTCGCCTCCCACCCCCCATTCCACCTGTTGGAGTTAGGTTTGTGATTTCCTTCCTATCACCTCTGCAG
Seq C2 exon
TGTGTATAAGCTGCGATTTCACTTGGTGGTTCCCAGGCGAGAGACATGTCCCTGTGTAGACCAGTTAATCTCCGATTTCAGCGAGCTTTTCCTCCAGCAGGTCAGTCAGCAGTGTCTACAGTTCCCCCAAGAGGAGCAGAACATGAGCAGATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061898-Rbak:NM_021326:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.375
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGCAGGTCTGGTGTGTC
R:
TCTGCTCATGTTCTGCTCCTCT
Band lengths:
345-1251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: