HsaINT0139351 @ hg19

Intron Retention

Gene

ENSG00000214022 | REPIN1

Description

replication initiator 1 [Source:HGNC Symbol;Acc:17922]

Coordinates

chr7:150066760-150071133:+

Coord C1 exon

chr7:150066760-150066957

Coord A exon

chr7:150066958-150068316

Coord C2 exon

chr7:150068317-150071133

Length

1359 bp

Sequences

Splice sites

5' ss Seq

AGGGTAGAG

5' ss Score

0.88

3' ss Seq

CTGTGCTTTTCCACCCTCAGCAG

3' ss Score

7.71

Exon sequences

Seq C1 exon

GTAAGGCTGGCCTCTCTGCAGTCAGAGGTCTGAGCTCTGCCATGGGGATAGGGGTGTCTTTATTACTGCAGTTTTCTCTAACACCTGGGGGCTACCGGAGTGTGGGCCGAAGCAGGCGCTGCAGCCGCGGAAGTATCCCCAGGAACATCCCCAAGAGGAGCTGGAAAAAGCCTCATCCCCAGCTCTGCAGTCTCCAGG

Seq A exon

GTAGAGTCTGGCCTTTGCTGTGCTCCCAAACCACGCCACAACAGGGGTGCACGGGCGTCCCCATCCCGGCGGAAGGAAATGGCCCTTTCTCATATCCTGGGGTCTTCCCTGTGCACAGTCTGACACTGGGAATGAGTGACCTTTGTGTTCCCTGAGAAGAGAGAGTGCGCTCTAGGGAATTTAGAAGGATGTGTCTGGAGCTTGTGAGCAGGCACAGAAGGGCCCTTAGGAGCCTAACTGCTTCCTTCCTCCTTCCGCGGAGGAGGCTCCTGTGCAGGAATCTGGGCTCCCCTGAGCTGTGGAAGAGCTGAACATGGGGCAGCCCCTGGCGAGGTTGGGGCAGGACCGGGCAGGGGACTGAGATTGCAGTCTCATCTTCCCTCCCCTTCTATTGCCCCAGTAATCTCCAGCACCCCGAGGGAGGCAGAGCCGGTGATCAGGCCCCGAGGGCAGCAGGCTGTGGGTGTTCCTTGGATTCAGGGAGAGCCTTCCTTCCTGCAATGTCCTAATTTGTGTGGGTGGAAGAGGGCAGGCGGGCAGAATGGGGGCACAGTCTGGGCAGGCGGTGGTCTGGCGTTAGACTGCCGGGAGTAGCACCCAGGGCTCTGCTCCTGTTCCCCGAGAAGGGCTGTTCTCACTTGTCCTCCAGCCTCCTACGGAGACTGCAGTTAGTGATGCTGAAAGTGCCTCCCCTGTGGGGCTAGGAATGAAAAGCTATAGACACCTTTTTCTCTGAGATCTTTGCAAACCCAGGCGCTTTAGAGGAAAGAACACTGGCCTGGGAGTTTAAAGACCTGTTCCCTAGTCTTGATTCTGCTGTTGGCTTACTGTGTCACCTTGGGCAGGTCTCGTCATCTTTGATGTCTCACAGTTGCTTCATCTGTTAAACAGGGAGCTCAGTGTCTGTTTGTCCAGCTTCTCAGAGTTGCTGTGCAGCTCGGATGTGGCATAGGAAACAGCAGACACAGGGAGAGGGCAGCATAAGGCACTGTAGGGAGCAGTGGCCACATTTTCTGGTGAGTCCTGTGGCAGGAATGTTTGTGCATTCAGCACTGGAGCATTTACTCCCTGTCTGACACTGGGGTAGCTGCCATGAGGGGGATTCTAGTATCAGAGTCCCTCCCTTCTGGAAGTTTCCAGGGCAACAAAGACATAAGACAAACATCCTTGAAATGTTATCTAAAAACCCAAGATTGAAATAATACATACCACACAAGGAAACAGGAGAGTAGTCTAGCTCCATGTCCGGGGCTCTAGGGGTTCATAGATGGCAGCTCCTGTCCGGGGCTGAGGTTGGGAGGGGAGAAACAGGGGCAGAGTGAGTTGGTCTCTGGAGTGACTGTGCTTTTCCACCCTCAG

Seq C2 exon

CAGAGGAAGAACCGATGCTGGAACGTCGTTGCAGGGGCCCCCTGGCCATGGGCCTGGCCCAGCCCCGACTCCTTTCTGGGCCCTCCCAGGAGTCACCCCAGACCCTGGGGAAGGAGTCCCGCGGGCTGAGGCAACAAGGCACGTCAGTGGCCCAGTCTGGTGCCCAAGCCCCAGGCAGGGCCCATCGCTGTGCCCACTGTCGAAGGCACTTCCCTGGCTGGGTGGCTCTGTGGCTTCACACCCGCCGGTGCCAGGCCCGGCTGCCCTTGCCCTGCCCTGAGTGTGGCCGTCGCTTTCGCCATGCCCCCTTCTTAGCACTGCACCGCCAGGTCCATGCTGCTGCCACCCCAGACCTGGGCTTTGCCTGCCACCTCTGTGGGCAGAGCTTCCGAGGCTGGGTGGCCCTGGTTCTGCATCTGCGGGCCCATTCAGCTGCAAAGCGGCCCATCGCTTGTCCCAAATGCGAGAGACGCTTCTGGCGACGAAAGCAGCTTCGAGCTCATCTGCGGCGGTGCCACCCTCCCGCCCCGGAGGCCCGGCCCTTCATATGCGGCAACTGTGGCCGGAGCTTTGCCCAGTGGGACCAGCTAGTTGCCCACAAGCGGGTGCACGTAGCTGAGGCCCTGGAGGAGGCCGCAGCCAAGGCTCTGGGGCCCCGGCCCAGGGGCCGCCCCGCGGTGACCGCCCCCCGGCCCGGTGGAGATGCCGTCGACCGCCCCTTCCAGTGTGCCTGTTGTGGCAAGCGCTTCCGGCACAAGCCCAACTTGATCGCTCACCGCCGCGTGCACACGGGCGAGCGGCCCCACCAGTGCCCCGAGTGCGGGAAGCGCTTTACCAATAAGCCCTATCTGACTTCGCACCGGCGCATCCACACCGGCGAGAAGCCCTACCCGTGCAAAGAGTGCGGCCGCCGCTTCCGGCACAAACCCAACCTGCTGTCTCACAGCAAGATTCACAAGCGATCCGAGGGGTCGGCCCAGGCCGCCCCCGGCCCGGGGAGCCCCCAGCTGCCAGCCGGCCCCCAGGAGTCCGCGGCCGAGCCCACCCCGGCGGTACCTCTGAAACCGGCCCAGGAGCCGCCGCCAGGGGCCCCGCCAGAGCACCCGCAGGACCCGATCGAAGCCCCCCCCTCCCTCTACAGCTGCGACGACTGCGGCAGGAGCTTCCGGCTGGAGCGCTTCCTGCGGGCCCACCAGCGGCAGCACACCGGGGAGCGGCCCTTCACCTGCGCCGAGTGCGGGAAGAACTTCGGCAAGAAGACGCACCTGGTGGCGCACTCGCGCGTGCACTCCGGCGAGCGGCCCTTCGCCTGCGAGGAGTGCGGCCGCCGCTTCTCCCAGGGCAGCCATCTGGCGGCGCATCGGCGCGACCACGCCCCCGATCGGCCCTTCGTGTGTCCCGACTGCGGCAAGGCCTTCCGCCACAAACCCTACCTGGCGGCGCACCGGCGCATCCACACCGGCGAGAAGCCCTACGTCTGCCCCGACTGCGGCAAAGCCTTCAGCCAGAAGTCCAACCTGGTGTCGCACCGGCGCATCCACACGGGCGAGCGGCCCTACGCCTGTCCCGACTGCGACCGCAGCTTCAGCCAGAAGTCCAACCTCATCACCCACCGCAAGAGCCACATCCGGGACGGCGCCTTCTGCTGTGCCATCTGTGGCCAGACCTTCGACGACGAGGAGAGACTCCTGGCCCACCAGAAGAAGCACGATGTCTGAGACGGTGGGCGGGGCCGTGTTGGCTGAGAGAGGGCTGGGGTCCTTCGTGGTGGGAGTCGCAGTGGGCTGGGGGTGCCTGCCTAGTGCTGGAGTAGGGGACAATGGGAATCCTAGAGGGGATGGAAGACGCGGGGAGTGAGCTGGGTGGGCCCTGCTAGCGAGAGAGGTCAACCCCGGTGGCCAGGGAACCCACTTCCAAGCGCAGGGACGCCGGCCTCCAGCTGGTGTGTGCTAAGGCTCCGTCCTGACTGCCCTGTGCCCTGGAAAAGCAGCAATAGCATCCGCCCCTTAGAGCCCTCTGGCTAGAGGAGCCACCAGTGGAAAGGAAGACCCTCCATCCTCTGGTATTAACGCCTTAATGCCCCTGTCTTTTACTGTAAGTTACTTAAGATCATTTTTGGAAGCAGGCGTGGTAGAGTCCTGTAAATGAATGCTCTGGGCTAGATACAGCTTGGAGAACCTGCTGGCCTTGTTAGACAGCACTTGGGCCTTTGCCAGCAGCAAGAGGTGAAGCGAAGCCACTCTTACCTCTCCCTTCCCCTCCCACCTGCCCCCTGCGTAGGCACCCAGACTTGGAGAGACCCGTCTGCTGTTAATACTTCCATCCTCTTCCTTCCCAAAGAGCAGATCCCAAGGCATTTACTCCTTGGTCTGTCTCGCTTTATCTGTCGCCCCTCCCAGCGCTGAGAGCCTCCCCTGGCTGTCAGCAGCACTGTGTCCAGGCTCTTGTCTGAACACCGCAGCCCCTCCTTCGCTCCTTCCAGAGCTCAGCATGTCACGGCAAGGACTGCCGCATTGGTGATGGAGGGCCAGCTGAGGGGAAGTTGCTGGTGAGTTTCCTTTTCTCCATTTCTAGCATATGGACACCTGGCCTCTGCTTGAGCACTTAGGTGACAGGAACTTCCGCACCTCCTGAGGCCCTGGATGATTCTAATTGTTAGAAATTCTAATTGTTAGAAATCCTTCCTTATAATGAATGAATTCTGCTTTCCTATAATTTCTACCTATTGGGCCTTGTTCTGTTCTCTGGAACTAAACAGAACAACCATTTACCCCTCCTTTTCAAACTAGAGAATAAAGATTTGGTTTTAGAACTGGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000214022-REPIN1:NM_001099695:2

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

No protein impact description available

No structure available

Features

Disorder rate (Iupred):

C1=0.365 A=NA C2=0.386

Domain overlap (PFAM):

C1:

NO

A:

NA

C2:

PF0009621=zf-C2H2=WD(100=4.0),PF0009621=zf-C2H2=WD(100=4.0),PF138941=zf-C2H2_4=WD(100=4.2),PF0009621=zf-C2H2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF138941=zf-C2H2_4=WD(100=4.2)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000417291