MmuINT0133633 @ mm9

Intron Retention

Gene

ENSMUSG00000052751 | Repin1

Description

replication initiator 1 [Source:MGI Symbol;Acc:MGI:1889817]

Coordinates

chr6:48544861-48549081:+

Coord C1 exon

chr6:48544861-48544975

Coord A exon

chr6:48544976-48546291

Coord C2 exon

chr6:48546292-48549081

Length

1316 bp

Sequences

Splice sites

5' ss Seq

AGGGTAGAG

5' ss Score

0.88

3' ss Seq

TTGTGCTTTTCCACCCTCAGCAG

3' ss Score

7.24

Exon sequences

Seq C1 exon

TTTTCTCTGTCATCCGGGGGCTACCGAAGTGTGGGCCGAAGCAGCCGAAGTCTCCCCAGGAACATCCCCAGAAGGAGCTGGAAAAAGCCTCACCCCCAGCTCTTCAGTCTTCAGG

Seq A exon

GTAGAGTTTGGCCTTTCTTGTGCCCTCAAACCAACCCATAACTCCAGCGCTCATGTCTCCTATACTTGCAGGACAGGGATGTACTGGGGAAGGAATCCATTCTCCTATCATGGAGTCTTCCCTGGGTTCAGGCGGGGGTGGGAGTTGGGGGTTGGTGGGGTTGAGTCATGTCTGTAGTCCCCCAAAAGAGAGCAGGCTGTAAAGGAATTCAGGAGGTTTTGCCCGGACAGAGGCCACGAACAGACATGAAAAGGTCCCTGGGAAGTCTTACTGCCACCCCTGAACTGACTCTGTGTAGGAGGCTCTCAGGAATCTGGGTTCCCCTGTGGGGTATAGCTGAAGTGGGGCAGTCCTTGGCCCGGTTTGGGCAGGACCAGGCAAGGGACAGAGATTATGATCTCTTCTTCCCACCCCTTTCTTTACCCCAGTAATCCCTAGCCCCCTTAAGAGATGCTGAGCCAGGGTTCTCCCTCACTCCAGGGGAGGGGCAGCAGACTGTGGGTGTTCCTTGGATTGAGAAGTGCTTGCCTCTCCCCCCTCCCCCCAATGTCCCAGTTGCAATTGCTTGGGTGTGGGTGGAGAAGGGCTGGCAGGCAGACTGTGGGTAGTCTGGACAGGTGGTGGCCTGGTGTTAGTCTGTGCTAGTAGAGGCACCTTGCCCACCTCCCAGGTCTGAAGAAAGGCTGTTTTCACTTGCTCTCCAGGCTTAGAGCTGAGCTGGGGAGGCTGGAAGTACCTTCCTCAAGGTTTTAGTCAGATGGTTTTTGAGGAGATCTCCACACACCTAGGTGTTAATGCGGAGCACACAGTGGCCTGGGTGTTGACAAGATCCTGTCTTGTGTGTCCGCCCCAAACCTCCCCCCATCCCGTCCTGCCCCCCCCCCCCACCTTTGGTTTGCTCATCGTTTACAGTATCACCTCAGGCAAGTCCTACCACTGTTTTATGCCCCACACTTGCTTCATGTGCCAATTAGGGAGCTCTGGTGTGGTAGAAGAAAGTGCTTGCCACAGGGAAAGGCAATAGGGGGGTTGCGATATGTAGGGTACAGTAGGAATATTCAAGAATATTTTCTGTAAGACCTCCTGACACAAGGTAGATACTATGGGAGAATCCCAAGGAATACCAACATGTCTCCCTTCTAGAAGTTTCCAGGGCAATAAAGATACAAAGCTATTCCCTAAGATAGAACCGTGAGGGCAGTTCCTAGAGGGAGGCGTTCTTCTTCCATGGGGTGGGAAGGGAGAAACTGGGAGCACACACTGGCCTGGGGATTGACAACAGTGTTCCTGCGGTGATTGTGCTTTTCCACCCTCAG

Seq C2 exon

CAGAGGAAGAACCGATGCTGGAACAGCGCTGCAGGGGCCCCACGGCCATGGGCCCAGCTCAGCCCTGGCTCTTTTCTGGGCCCTCCCAGGAGTCCTCCCAGCCCGACAGAGGGTTGAGGTACCAGGGCAAATCAGCTCAGCCAAGAGGCCAAACCCCAGGCAAGGTCCATCGTTGTGCCCACTGTCGGAAGCGCTTCCCGGGCTGGGTGGCCCTGTGGCTTCATGCTCGGCGGTGCCAGGCCCGGCTGCCTCTGCCCTGCCATGAATGCAACCAGCGCTTTCGCCACGCCCCCTTCTTAGCGCTGCATCTTCAGGTTCATGCTTCTGCAGTCCCCGACCTGGGTTTCATCTGCCACCTATGTGGGCATAGCTTCCGAGGATGGGTAGCCCTGGTTCTGCATCTGCGGGCTCACTCAGCTTCAAAGCGGCCCATCACTTGCCCTGAATGCGACAGACGCTTCTGGCGACAAAAACAGCTTCGAGCTCATCTGCGAAGGTGCCAGCCCCCTGTCCCTGAGGCCCGGCCCTTCATATGCGGCAACTGTGGCCGGAGCTTTGCCCAATGGGACCAACTGGTTGTTCACAAGCGGGTGCACGTGGCTGAGGCCTTGGAGGAGGCAGCAGCCAAAGCCCTGGGTCCTCGCCCACGAGGACGTCCCGCAGCTCCCAGGCCTGGTGGAGACGCTGTGGACCGCCCCTTCCAGTGTGCCTGCTGCGGCAAGCGTTTCCGCCACAAGCCCAATCTGATCGCCCACCGCCGCGTGCACACTGGTGAGCGACCACACCAGTGCCCAGAGTGCGGGAAGCGTTTCACCAACAAGCCCTACCTGACCTCGCACCGGCGCATACATACCGGCGAGAAGCCCTACCCATGCACCGAGTGTGGCCGCCGCTTCCGCCACAAACCCAACCTGTTGTCGCACAGCAAAATCCACAAGCGCTTGGAGGTCTCAGCGCAGGCTGCCCCACACCCCGAGAGTCACCAGATTGCAGCAGAGCCTATGGCACAACCTGCACTTGGGGTGCCCCTGGGGTCCCCGCGGACCCCAGCTGAGGCACCTGCGCTCCTGCATAGCTGCTCCGACTGCGGCCGCAGCTTCCGGCTGGAGCGCTTCCTGCGGCTACACCAGAGGCAGCACACAGGGGAGAGGCCCTTCGCCTGCACAGAGTGTGGCAAGAACTTCGGCAAGAAGACGCACCTGGTGGCGCACTCACGCGTGCACTCCGGCGAACGTCCCTTCGCCTGCGAGGAGTGTGGTCGCCGTTTCTCACAGGGCAGCCACCTGGCAGCCCACCGGCGAGACCATGCACCAGAGAGGCCCTTCGTGTGCCCGGACTGCGGCAAGGCTTTCCGCCACAAGCCCTACCTGGCTGCGCACCGACGCATCCACACAGGCGAGAAACCCTATGTGTGTCCCGACTGTGGCAAAGCTTTCAGTCAGAAGTCCAACCTGGTGTCCCACCGGCGCATCCACACAGGCGAGCGGCCCTACGCCTGCCCCGACTGTGATCGTAGCTTCAGTCAGAAGTCCAATCTTATCACACACCGGAAGAGCCACATCCGGGATGGCGCCTTCTGTTGTGCCATCTGTGGCCAGACCTTTGATGACGAGGACCGACTCTTGATGCACCAGAAGAAGCATGATGCCTGAGAGGGGCCGTAGGCCTAGGAAGACAGGCCTGGATATCCTTGGCAACAGGGTGTCAGTGGTCCGGGTGGGGTACCTACACTGATGCTGCTAGAGGAACAGGTAAAGATCCCAGAGGGATAGAGGAGACAGTGATCTGGGCTCTGTTTAGGAATGGACTTTCCCCTAGGTATCCAGGGAACCCATTTTAGAATTCGGGGGACCTGGCTTTGAGCTAGTTGGCCCCCAGCCCCAGCTGGTTTTTCTAAGGGTCAACTCAGACTGCCCTGTACCCTGGAAAAATAGCAATAGCAGCCCCATCTACCCTTTGAGTCCTCAACTAAACACCAGTGGGAAGAGAACCGTTCCATCCTCTGGTGTTAACGCCTTAATGTCCCCAGTATTTACTATGAGTTGCTTCAGGTCATTTTTTGATTTTTTGTTTTTTCTTTTGGAAGTAGGTGTGGTATAGTCGTTAGTAAATGAATCCCTGGGCAGGGAATATGGGCTGGCCGGCTGCACCTTGGTGAACCTGCTGGTTAGGGCAGCAGCAGAGGTGAGGCTGTTCCTCTCTCTCTCTGTCTCTCTCTGGTCTCTGTCTCTCTCTCTTTTTTTACCAGAACCCTTCTGCAATGCCTCCTGCATAGGTCCCAAGATGTGTAGCGATCCATCCCTGGTTAGCAATTCCATCAATTTCTTGCATATTATCCTCCCAGGACATTGATTTACTCCTTTACCAGCCTGGCTTTTTTTTTTTTTTTTTTAATCTGCCTGCTCTCCCCTAAGTATAGGCCTTCCTGGTGGTTTTGTTTAACCCCATGACCCTCCCCAACTCTTCTCAGAGCTTTGGGGGTTATGTGAAAGGCTGACTAGTTGAGGGTTTAGCTGCAGGGAAGGTCCTGGGTAGATTTCCTTTTTAAGGTTCCCAGGGTGTGGATGCCAGCCTCCACCCATGCACCTGGGTACTGGGGCACTGTTACCTCCAGAAGGCACTACTTCTATCGTAGGGCGAGTCTAATTGTTAGACATTTCTTACTTATAGTGATTGGATTCTGCTTTCCTATGACTTCTGCCTACTGGGTCTTGTTTTGTTCCTTGGATCGAAACAGAACCGTTTACCCACCTTTACAAACTAGAGAATAAAGATTTGGTTTTAGAACTA

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000052751-Repin1:NM_001079903:2

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

No protein impact description available

No structure available

Features

Disorder rate (Iupred):

C1=NA A=NA C2=NA

Domain overlap (PFAM):

C1:

NA

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=4.9),PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF138941=zf-C2H2_4=WD(100=4.4)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

NA

Other Skipping Isoforms:

ENSMUSP00000009420, ENSMUSP00000113548, ENSMUSP00000118890, ENSMUSP00000121975, ENSMUSP00000132365

Associated events

Other assemblies

mm10

Conservation