HsaINT0139904 @ hg19
Intron Retention
Gene
ENSG00000159496 | RGL4
Description
ral guanine nucleotide dissociation stimulator-like 4 [Source:HGNC Symbol;Acc:31911]
Coordinates
chr22:24039358-24040048:+
Coord C1 exon
chr22:24039358-24039432
Coord A exon
chr22:24039433-24040024
Coord C2 exon
chr22:24040025-24040048
Length
592 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
GGACTCTGTCTGCCTTCCAGGGC
3' ss Score
8.85
Exon sequences
Seq C1 exon
GGTGTGGTCCCCTTCCTGGGGGATTTTCTGACTGAGTTACAGAGGCTGGATTCGGCCATCCCGGACGACCTGGAT
Seq A exon
GTGAGTGAGCCTGGGGCAGGGTGCTTGGGAACCAAGATCCTGAAGCTTGGGAGGAGAGGGTCCTGGACCGAGCCTTTAGATCTCAGCCCTTGGCAAACCTCCTCTCCTAAGAGCCTCACAGCTGCTCCTGTGGGTGGGGGTGTCAGGCCCATCTCATCACCTCTGAGTGATGGAGGCTCCATGGCAGCCACCAGGCCCTATTCCTGAGTGGTGAAGCTGCAGAGCTGCCTGACTGCAAAGCTGCTGAGGTGTGGGCTGAACTGGGCTCAGCTTCTCCCTAGGGTAGTCCCGTAATAGGAGGGTGAAATTGAGCCTCTCCAAGGGCAGGCAGTTCCAAGGTCACTGAGCGCTTTCTTTCTATGAGAGACCTCAGTTTCCCTGTCTGTCATCACAGAGGGTTGGGGCAGAAGGTCCCTGGGCCTCAGCTCCCATTCCCCCTGCTCTAGAGCCCGGAGCCTGAGGCAGGTCCAAGTCCTGTCGTGTGCACATCCCCTGACCCTGGTGGCCCTGGCAGTAGTGCAGCATGGGAAGGGGTGGGGTGGGGCTGGTTGTGGGCCAGGGGCCTTTCTGATGGACTCTGTCTGCCTTCCAG
Seq C2 exon
GGCAACACCAACAAGAGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159496-RGL4:NM_153615:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.816
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.5=100)
A:
NA
C2:
PF0061714=RasGEF=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)