HsaINT0143237 @ hg38
Intron Retention
Gene
ENSG00000007376 | RPUSD1
Description
RNA pseudouridylate synthase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:14173]
Coordinates
chr16:784974-786928:-
Coord C1 exon
chr16:786827-786928
Coord A exon
chr16:786378-786826
Coord C2 exon
chr16:784974-786377
Length
449 bp
Sequences
Splice sites
5' ss Seq
CGGGTGTGT
5' ss Score
5.31
3' ss Seq
GCACCGCCCTCATCCCGCAGGCC
3' ss Score
11.03
Exon sequences
Seq C1 exon
GTTGTGAGAACCCAAAGCCAAGCCTCACAGATCTCGTGGTTCTGGAACACGGGCTGTACGCAGGCGATCCTGTCTCCAAAGTGCTGCTGAAGCCGCTCACGG
Seq A exon
GTGTGTCTGGGGTGGGCGGTGTCCTGGTGGTGACAGAAGGGAAACTGAGGCACAGGGCCACGAAGCTTATGTTGGGCCACCCTGAGCATCAGGGCAGAGCTGGCAACAAGCACTCCTGCGTTCTTAACTCCACGCCCTGCAGCCTCTCAGCTTCTCACCTGACACAGGGTCCCTGCTGGCTCCTGACTGATTCCTTGGGGGTCTGGCTGGCCTAGATTCTCCAGGACCGAGCACCACCCTGGCCCTGTCCTCACCAGTGGTGACCTGAACACAATCTTCTGTCCTAAATACTGTCATCCTCACTCATGGCAGGGGACAGGGAGAGTTCCACCCCAAGAGGCTGCTTCAAGACTGCAGCGGGGTCATGACGGGAGGTGGGTCCTGGTCAGGGAGATAGGTGTGGATCGGCCCCGCTCCCAGCTTGATCCGGCACCGCCCTCATCCCGCAG
Seq C2 exon
GCCGGACACACCAGCTGCGCGTGCACTGCAGTGCCCTGGGCCACCCCGTGGTGGGCGACCTGACCTACGGAGAAGTCTCGGGCCGGGAGGACCGGCCGTTCAGAATGATGCTGCACGCTTTCTACCTGCGCATCCCCACGGACACCGAGTGTGTGGAGGTCTGCACGCCTGACCCCTTCCTGCCCTCCCTGGATGCCTGCTGGAGCCCCCACACACTGCTGCAGTCGCTGGACCAGCTCGTGCAGGCCTTACGGGCCACCCCCGACCCTGACCCCGAGGATAGGGGCCCCAGGCCAGGCAGCCCCTCCGCACTCCTGCCTGGGCCCGGCCGGCCTCCTCCACCCCCAACCAAGCCCCCTGAGACTGAGGCACAGCGGGGCCCCTGCCTGCAGTGGCTGTCGGAGTGGACGCTGGAACCGGACAGCTGAGAGCCGTGGGGCTGGGGCAGGGGGTGTCAGCTGCACAGCGGGACTCTAGGGAGATGGGCGAGCGAGCGTCTGCTCACTGGCTCTGGGGCCTCGAGGTGCCAGGCAGCATCAGGCCCACTGGGTTGCCCCGGCCAGGCCTGCGAGGAAGGGCTGAGGTGGGGCCGGCAGGGGGCGCCAGGCAGCCGTGATCACAGGTGACGACCGCACCGCGGCCGTGGGACTGATGCGGGATCCCGAGGGCCTTCCTGCCCACATGCCCCGGGAGAAACCGAGGCCCCTCCCTCCTCCTGGAACAGCTTCCGGCTCTCAAGCGTCACCCCAGGGGCGTCAGTTTTACGGACTCAAGGTCACCTCAGGAAGAGGCAGGGCCAGGTTTTGGGATAGGCTTTGCCTCCAGGATGGGCTGCTCCTGGGCCTGGTGAGCTACTGCCCCCAACCTACCCTCTAGAGGGGCTGGGAAGGGCCGTTCTGGGCTCACCTGGCCTGGGAGACCCATCTGGTCCCTGCGTCCTCTGCCCCTCACTGCTCTGTGCAGATCCTGTCGCCCTCAGCTGCCTCCTCCCGAGACCTAATGGTCCCTGCTGGGCTCGAGTCTGCAGGCCCGGCTGCGTGTGCCTTGGCCTCACTGTACCAGTGGTTCCCTCTCTGCCCGGATTCTGAGCTCAGTGTGGTGTTTGGTGCACAGGGGTTGGTCAGGGGCCATGGCCAAGGCCCTGCCACGCACGCCCATCCCTCAGATCCACTGTGAGCACCAACCTGCTGCAGTCTCTTGGGCCCCTGCTGGCAGCTCTGCCACGTCACCGCCTGCCTGGCTCCCACACAGCCATGCATTGTCACTCTGCCTCCGGGACCCCAGCTTGGGAGCTGTGGGTCTGCCAGGTCCCACCTCCTCTGTCCCCCATGCCACAACCTGGGCTCCTGGCTACAGCAGGGCTCCAGGGACTCCAAATAAATGTTCAGTGACTGGCTCCAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007376:ENST00000007264:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.438
Domain overlap (PFAM):
C1:
PF0160011=Corona_S1=PD(13.4=53.3),PF0084917=PseudoU_synth_2=PD(16.3=56.7)
A:
NA
C2:
PF0084917=PseudoU_synth_2=PD(6.6=7.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGGAACACGGGCTGTAC
R:
CTATCCTCGGGGTCAGGGTC
Band lengths:
347-796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development