HsaINT0144191 @ hg38
Intron Retention
Gene
ENSG00000143171 | RXRG
Description
retinoid X receptor gamma [Source:HGNC Symbol;Acc:HGNC:10479]
Coordinates
chr1:165410949-165417220:-
Coord C1 exon
chr1:165417041-165417220
Coord A exon
chr1:165411110-165417040
Coord C2 exon
chr1:165410949-165411109
Length
5931 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CATGTCCTGCTGCATGTCAGCTG
3' ss Score
5.9
Exon sequences
Seq C1 exon
GAAAGCACTACGGGGTATACAGTTGTGAAGGCTGCAAAGGGTTCTTCAAGAGGACGATAAGGAAGGACCTCATCTACACGTGTCGGGATAATAAAGACTGCCTCATTGACAAGCGTCAGCGCAACCGCTGCCAGTACTGTCGCTATCAGAAGTGCCTTGTCATGGGCATGAAGAGGGAAG
Seq A exon
GTGAGACACATTCAGTTCCAAAACTCGTGTCCGGAGAGAGGCATTTCCTAGGCAAGGGGACATTCAACTGCAATACACGAGAAGTCATGGTGCCCAAAGTCATCCTAATCTCCACTTCAAATTTCTTTCCCACAGGGCTCTAAAGAGAAGTCTGAATAGGAAATTAGGATGACTTTGGGTACTCGTGTATTGCAATTGAATGTACCCTTTTCCTAGGAAGTGTGTCTCTCCAGAGCAGAGAGGGCAAGAGGCATCTTCCTCCTCCACATTTACCCATCCTCTTCTGGAGCCCAGATGGTGATCCCCAAACTGGACCGTCTCCTTTTTTCTTCCAATAACCAGGCAGCAAGTCTCAGAGCCAAGGTTTCAGGGTCCTTATGATCTGCTCTACCAATGGATCGTCAGACTGACCTTCAGGGTGGAGGTGACTTTTCTCCTCTAATCCTAGGTCTCTCTCTGGGGCAAACTGTAGGTTTCATTTCACTCACTGAGTTTTTTTTACCTGGGTCTGCTATCAAATCTTTGATATTGGTATATTCCATCATCTTTTGGCATTACTGGCATTACACAGGTTTGACAGACCTAACCTTCCCATTCAGAGAGACCACCACTGTGTGTTGAAACCATCACATCTTTTAATTTATAGTGTGGTTTAGCTGGGTATTCTAGTATGAGAGAAAAAAACCTCAGAAGGTGCTTTCTGTCCCGTTAGTAGACAGAAAAGACTTTCCATTAAGTATCACAGATAAATTGAAGTGGGCAGTTAATTAACTAGTGAGCTCAAGCAGGGACATGGGGATAGTGGTGAATCTTAATAGATTTTAGAGTAAGAAGGTCCTGCCTCTCTTTAGGAAATAAGAACAAGGAGTTCAGTCAGGCCCAGCACGCTCCTCATTCTTGAGGAACTTCTTTTCTGTGAGAAGAGGGCATCTTACTGAAAGGGTCAATGAAGAGGGGCTCTTTGTGTCCCTGCTAAAAGTGAATGTCACCCATGAGCAAACAAATTCTTGTAATCTTAACATGTCAAGATGCTAGAGGTGGCCTTACAGAGTCACCTAATCAACTGTAACCATCCGCCAGATGAGAAAACAGGCTCACAGAGATGAACGGAGTTTCCTGAGGTGCCAAAGGCAGTTAATGAACTGACCCCAGGTCTCTGACTTTCAGATCAGCCCTAGTCTGTGTCTCCTTCCCTGCCAGGTTGTGAAGGAACTGAAGATGGCCCTCGCTGTGACATTTAACAGCAACCTCAAAAGTGAGAGACCCAAATCTCAGCTCCTGAAAATCTGCCCCACACCCCAGCCTGTTCCTCACACAGTCTTCCCCTTTCAGGAAATGGCCACTTATTTTCCAGTTGCTCAGAACAAAAACCATTGACTCCCCTCTTTTTTCACACACCACATGTAGCGGGTGAGGAAGTCTTGTCTCTTCCTCAAACTATGCCCAGAATCTTTCCATGTCTCACTACTTTTACCACTAACCCCCCAATCTAAGCTAACTGTATATTTTGTAGTGATCTACACAGCATCCTAAGACATCTCCCTGCTTCCATCTTTGTCCTCCTACAGTCTCTTCTTAGCACAGTAGCCAGAGGGAGGCTTTGAACAAGTAGATTGGGTCAAGGTGTTCCTTCAGCAGAATCCTCCAATGTCTTTCCTTCTCACCCAGAAAAAAAGGCAAAAATCTTTGTCATGACTTAAGGTTGTACATAGTCTGGATGCCCTGTTGTCTCTCAGCCTCAGCCTTCCTGGCCTCTTTGGTGATCCTCAACTATACCAGAGATGCACCCACCTCAGGGCCTTTGCACTTGCTGTCTGTCTAGAATGATTTTTTTTTCAGGTATCTGATGGCTCACTTTTTCTCATCCTTCGTATCTTTACCCAATTCTCACTTTCTTGGTAAAGCCTTGCCTGGTTATATCATCTAAAATTGCACCAGCCACCCCCAACCCTTCCTTGTCTCTTTTACACAGTAGTTATCATGATCTAACACTTGTACTTATCTTGTTTACTGTCTGTATCCATGAAGGCGGGGGCTTCATCTGCTTTTTTCCCCCACTGCTTTATCACCAGTGACTAATACATTGTAGCCATTTAATAAATTGTTGAATGAATAGTTTAAACTGAATGCTGAAATCAGAAGTTTTAGAAGTGCAGGAGCTCCTAAAAATGACTCATTCATTTATTCATTGAGTATTAGCTGAGTGCCTACTCTGTGCTTACGTCATACTTGCTGTGGCAGTGGGATCAATGATGTTACAGATTGGAGCATGCGATATGAAATACCTGCTGGTGAAGAACATCTTTTTTCCACCAGGATAGAATTGGATACTCCTTGGAGCTTCCCCCACCATGATTATCAAAATGAAACTAATGACTACAAGTATTTCTCCCATTAACAAGAGTCCAGTGACTGCAGGGTCATTTTTTTCCCTCCTAAAACACTTGAGATAAGTTTCCAATTGACTTGGAACAGTAACAGTTTTCATTAAGCACATGATATTGAATTAAAGGAAAGTGAATGGTCTCAGTCAGAGAAACCATCATTTCTATTTCTCTAGAGTTATTCTAATCCATCTCTGAAAATGCAGGCTGAATATCCCCAGCTCAGTTAGGGACAGAGTGGTCAATAGGCCAAATGTTGGGAACTGTGGTTCGTTAAATGTTTTTAAAAAAGGAAGGAAAACAGGGACATGTGAACTGTAAGAGACACTTCTATGGTTTGGGTACTTTAATAGAAAGTTGGACCCAATTTTTGCTCCTGCATTTTTTAAAAGAATGTGGAGAAACAGAAAGAATAGTGAAAAGCTGAGTAGTAAAAATTAGGAGAGGGAAAGGAGCTCTTAGGGAACTTTCTGAAGAGATTGGCACCATTTACCCTGACAAAGGGAAGGCAAAGAAGTGAATCAATTCCTCCGCTGACTATATAAGGGGGCGCATTTCAAAAGGCTACTGGATAGCCTGTCCACCGCCATCATTTCTGGTCTTGATTTATAGAATTTGGGGCTCAGTTTGAACACTTTCTTGAGGACAAGAATAATAACATCCTGGAGCAGATAACAGAGAGACCATGGAAATCACACAGATAAAGAGATGGAATTGGGGTAGGTACAGAATTTACCTGCCTGGGATCAGGGGCCAGGACCTGTTGCCCTTTTAGGATAAATAATGTTAAAGCTAGAGTGGACATTTTCTATTCTCTAACGTAACACGTCCATTTCCTGAAAGACAAATTAGAGGTTTGGAGAGCCTAGCCCACACAAGCCCACACAGCAAGCACATGGCAGACCCTGTATAGGACTGGGACCCTCTGATTAGTGGGCCACCTCAGGAATTCTGGAATGTCTATTTCCATGATTTCTTGTCATATACATGTAGTTTCAAGACTGGTGAATGGATTGCCTTTGAGGCAGTTCATGGGCAGCATTGGTATCCTTGTGAGCCCTGTGTGGTCTTTATTAATAGACCTAGCCCAGTACCTTGGAGGCAGTACTGAGAGGTTAGAGATGGGCCCAGGAGGAGCCATTGTGGGTGCATGTGCTGGCTCCATCATGGCCTACCACATGCCCTCAGATATGTTACTAGTTTCTCTGTGGCTCGTAGTATGTCAGAGCATTATTGTGAGGATTAAATGAAATGTAATCTATCTAAAATGTTGAGCATAATTCCTGACACAGAGAAAGAGCTTCATAAATTTTGCCTATTGTAATAAGTGCGAAATAAACACGTGTTGGATGAATGGTTAAAATCCTTTCCTAAGGCAGAAGTTTGGTTTTATTTTTAATCATCCAGGGTTCCCTGGATGTACCCTGATGTGTGTCGTAACAGTAGCTCAGAATGTCTGACAAGTAGAAGCTACCCCCCAATAACAATATATGACTCCTCATTTATGACAGGAAGACTTAAGGCACAAAGAGGAAAAGTGAATAGCAAAGGGTTTGCTCATACAAAACCAGAATTCGAATCAAATTCCCTGACACCAAGGATATTTTCTCTGAAGCTTGAAGGTTATTTTCCTTGAGTGTTACAAATCTCTAGAAGACATTGATTGAGGACCACGAATGAAACTTAACTTAGTTTGCTTTCCCTCATCTTTTAAAGTCAAGACAAATAGAAGCTCATAACCTACCTTTAAAAAAATTAATACAAGAAGCATTCAACATTTCCCAGTAAATCCAAATATAATAAAAAATACATATTATAGTTTCTACATGTTGTCAGTGAATGAAGTCTGACAGAGTGAGCAGAAAGTAAGGATGAGACAGAAGGAGGAAGAAAACAGGAGAGAGAGGAAGAGGCCAAAAAGGGAGATGGAGAGATGAGCCCAAGGGGGTAAAAAGACACCAAAGGCAAGAGGAAATAACTATTTGTATTGAGTTTTTATAATTGCTTCATTCATCCTTACGATATTATTTCAGTTAACTACTGAAGAGTACCAACCTTAACTAAGTACCAGCCTTAACTATCTCAGTTAATCTCTGCTTCACAGATAAGGGATCTGGGGCTTACTAAGCTCAGTCATATGGCCAATGCCATTTAGCAAGGAAGGGGTAGAGTTATATGTGAAAAAGTTTTCTTTGACTCCAAGGCACAGGTTTTTTCCCCTCTTTTCACTATTTTCTCCTCTCTGTTCTCTCTCCCTTCTGTTTCCTCTTTTTCTCACCCTGTTTTGTTGTCTCTTTCCCTTATTCCTTTTCTTCTTTCTACCCTCCTTGCCTCTCTCTCAATGACACAGTACCATTCTTGTCTTGAAGCTTTTTGGCGTATCTCCACTAAGTTTTGGAGCATAAGTTGTGTTTTTGCAGTCATACTCTTCTCTGACCTACCTTGAGAGACTGATATGGCTCGCATGACAAACTAGATGTTCGGCATTGCGATTCCAGTCCATTCTGCAGCCTCTGGGGCTCATTATCTCCTCAGAGAGTAGGAGGCACTCTTGCAAGTGGACTATGGGGAGGAAGGGAGAGAAACAGAAATAGGAGCTGCTAGTGGAGTAGCTGTCATGGAGTTTCAGGCTAGTCACCTGCTTAAAGGATAATTTTCTTGACTTTGGGGATGTAAAAAATGTGTTCTAATATTGAATTCTGTTTATTGCTGCTGTGAATAAGATGGAAACTACAGCCTTCTAGATGATGGAAACTAACCCAACAGAGACTTTTCTCCTGATGAAGAGCATAGAATTGGAGGGGGCAGCAGTCTGCTTTCAATCCTAATGTATAGACATGGAGGGTTCTGAGAGTTGCACTGAACCTTGATGAAAACCCTAAGCTTTGGAGAGGCTGAGATAATTTCAGCCTACACCTTTGCCTATGTACCCTCCCCAACCTCCAAAATGAGCCACTGATTCTGAAATGTCATCTAGGTGACATCCCTCCACCCCTTCACTTACTAAATACCCACAGCTGGCTCCCTAAAGATCTTCCCTGACAAGTCGGATCAGGTGATGTTGTGTTCAAGCTGGTGCACTAGGGGCAGACCTAATGGGACGTGAATGCCAAGGATGATGCATAGGATCTGACAGAGGGAGTTTTTAAAGTAATGTGCTTGTTACTTAACTATTTCATGCTCACAGTTTTTTAGAGGCAGCAGGTAGAGCAAGAATGTGGGGATCTGCAGGGATAGCAAGGAGTGGTTGGCCCATTAAAAGAGAGGATACAATTAGAGTTTATTAAAGCTTAAAATGGATACTTCCTAGTGTCGTCACCATAATGCATTGGAAAGAATATGCACTAAAGAACCCCTCATTCTCCTTAGGCATAAGCAAACAGCTTTGCTTTCCTTGTTTCATCTGTCAACATTCCAACATCCCCAATTCAGGATCATAATGATTCCCCTTTCATAGATGAGTAAATTGAGGCTCATGTGGGTAATAAACTTTCCCACTGTTGTCCTGGGCATTATGGTAACCTCTGCATGTCCTGCTGCATGTCAG
Seq C2 exon
CTGTGCAAGAAGAAAGACAGAGGAGCCGAGAGCGAGCTGAGAGTGAGGCAGAATGTGCTACCAGTGGTCATGAAGACATGCCTGTGGAGAGGATTCTAGAAGCTGAACTTGCTGTTGAACCAAAGACAGAATCCTATGGTGACATGAATATGGAGAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143171:ENST00000359842:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.519
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(82.9=95.1)
A:
NA
C2:
PF0010425=Hormone_recep=PU(5.7=20.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development