RnoINT0130060 @ rn6
Intron Retention
Gene
ENSRNOG00000004537 | Rxrg
Description
retinoid X receptor gamma [Source:RGD Symbol;Acc:620046]
Coordinates
chr13:85854898-85858160:+
Coord C1 exon
chr13:85854898-85855077
Coord A exon
chr13:85855078-85857999
Coord C2 exon
chr13:85858000-85858160
Length
2922 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGGGTCTCACCCCATGTCAGCTG
3' ss Score
4.29
Exon sequences
Seq C1 exon
GAAAGCACTACGGGGTGTATAGCTGTGAAGGCTGCAAAGGCTTCTTCAAGAGAACCATAAGGAAAGACCTCATCTACACGTGTCGGGATAACAAAGACTGTCTCATCGACAAGCGCCAGCGCAACCGTTGCCAGTACTGTCGTTACCAGAAGTGCCTGGTCATGGGCATGAAGAGGGAAG
Seq A exon
GTGAGGGGCCCCCTGCTCCCCTCTACCTAAAGCAGAGCCAGGCTGTGCTCAGCTCTGGGAGGGAGAAGGTTGATGTGGAAGTTAGGATGAGTCTTAGATACCACAGCTTCTCAAGGCTTACCTCCAGAGCTCAGAGAGCAAGAGACATCTCTTCCTCCATTATCTCTCTTCTCTGGGAGCCCAAGGACAGGCACCCATGTAAGGCCCTCTTCATTTCATTTCTTTCAGTAAATGGGCAGTGGGTCTCAGAGGTTTAGTGGTCTTGTGCTCTGCTGGGCCTGCATCAGACGGACCTTCAAGGTGGAGCCGGCTTCTTCCTCTAACCTCAGGTCTCCCTGGGAAAGCTGCAGGTTGGCTGTTGCCCTTGGGGACTCAGAACCCTGGCCTGCTGCGAATCCTCCCAGGCTGGCATGCTCCTCAGTCTTAGTGGGCTCTTGGCATCTACAGGTCTGACAGATGGGCCTTCTCAGTCCCTGAGTGTCACCGGGCTTCATCGTGTGACTTACAGCGTGAGTTAGTGGGCTAGCCTCGTGTCAGAGAGTAACAAATGTGAAAGCGCCTTTCCCTTCTTGTTCTTGCTTTAAAAGATCGAAAGTCATCCTGCTAAAGTAAGACAAGTAAATTGAAGTGGGCAGTTCATTAAGCAGAGGGCTTCGTGAAGGTGCCTGGTGTGAGTGGGAAATCTCCGTTGTTGTGCGGGAAGGATGTTGTCCCCTTGCAGGTTGGGGTGACTCACTGATTGAGTTTGCTCCAGGCCTCTCGTGGTGAGAGGGAGGGAATCTGCCAGAGAGAACCAATGAAAATGCAGATTCTCAAGCCCATGATTAGAGGGAGTCCAGGACAGGAGAAGGGAACATTCAGAATCATTCAACCAGTGAGAACCAGTTCACAGATAACAAAAGACACCGAGAGCCAAGGGGCATCCAATGATGCCTCCCTGCATCATCCTTGACTCTCTGTGTCATTCCTTGGGAAAACACCAGTGTGAACAAGATGGTGACTAAAGCCATTTCCCCACCACAGCATCCAGATCTCACTAAAAGAAAGGACAAGACATCTCTGCTGTAGTTTCCAGGTTGTATAAGGCATAGGTGCTGCTTTGCCCTGCAAGTTCAGCCTGTCCTTGTGCCCCGGAGGCCATGTGGAAGGTCCTTAAGTGGGCTCTGGAGACAGCCAGCCTGGGTCCCAGGCTGACACAAACACTTCTTAGCTTTTGACTTCAGACAGGTTTTCTAGTTTCTCTGTGGTTCATAGTAACCCAACAGAATTGCTGGATGGGGTTAAATGAGATACAACAATGTATATAGAGTATTGAGCATAAAACACACCTTCTGATTCAGAAAGGGCTCCATTAATGTTGGGTGCTGGAGAACCTGAAAATCCACAATAACTAGTTATTAAGTGGATGGATGGAAGGAAGCCTGAAAAGCAGAGAGTCTGGAGTTACTGTAGCTCAGCTACTGTCCCCAATATATTGCCATGGATGTTGTGACAGGCGCTGAGAATATCTGTCATGAAGAATATCCTCCAGCAACCACATTTTAAACAGTCAGGTTTGGAGTACTAATGGGAAGAGAGGGCAGCCAGTTCTTAACTCAGTTAATGGCAAAATGGGGATTGGAATCTGACGGCCTGAAACCAAGGCTTCCCCTTGAAGCGTCAAGGTCACTTTCTCCGAGTGTTCCAAGTCCATTCGGAGAGTTGACTGAGGATCCTAGGAAGAACGTGACTCAGCTTGCTTCTCCTGCTTTGTTACTGTTTTTGTTTGAAGTCAGGACAAATGGAGAAATTCATTGATTTCTTAAAGAAAGGTGAAAGAGCACGGAAAAATACAACTGAGAGACAAATACGCGCCATAGTTCTCATGGTTGTCACTGAACAGACACTGATGAGTGAACTGAAAAAAAATGAGAGAGAGAGAGGAGGGGGGAGGAGAGATTCAGTGTGCAGCACCCAGCTCCAGATCTTCAGTCAGCCTCTGTGTCTGGTAAGAGGATAGGGGCTCCTCAGCCAGTGGGCTGGGAGCAGAGAGGAGAGTCCCGGAGGAGAGGCTACCTCTGACAGGGCTTTACCAAGTTAGAGCGGGATTTGCTCTTTGGGGGATGCAAACTCTCTTCCCGTATTGAATTCTGCCCATTGATGCTGGAACTAAATTAGAACGAGCGGCCTTCTAGACAGGTAGAAAAGAACCCAACCAAAGCTCTTCTGAAGAGGGCAGTGTTGGAGTATGAGGTCTGTGCCGCATCCTGATGCATGGACCCGAGGTTCCGAGATGTAGAGCCGTCTGGGATGAAAATCCCAAGTTTGGGGAAGGCGGTGGGAGCTCCAGCCAACAGCTTTGCCTGGGTGCCCTCCCCCACCCATGAAATCAGTGCACATTCTGAAATGTCTTCTAGGTGACATCCCTCCACCCCTTCACTTACTAAATCCCCACAGCTGGCTCCCGGAAGATTTCCCCTGACAAGTCGGATCAGGTGATGTTGTGTTCCGGCTGTTGCACATGGGGGGCCTACCTAATGGGACGTGAATGCCAGGGCAGATGCATGGGATCTGACAGGAGAGTTTTTACAGTAATGGGCTTGCTTCTTAACTGTTGCATTGCTCACAGCCTATCAGAGGCATCAGTCTAAGAAGGATAACAGACACAGGGGATAGGGAGGAGATGTTAGCTCCTTCAAAGAAAGGTGGGATTGAGTCAAAAATAGCAAGATTAAGAGGGCCTTGGCAACGCATTGGAAACAGTATAACTAGAGACCCCATCTCTGCCTCAACATTCTGTCGGTCTGACAGCATTATAGTGCCCCTGGTTCGATACCATGGTGAGTCTCATTTTATGTGGGAGCAACTCTAGGCTTAGGTAGGTAACTGCCCCACACTGGTCCTTGACACTCTGTAACGTCTGTGGGTCTCACCCCATGTCAG
Seq C2 exon
CTGTGCAAGAAGAAAGGCAGAGGAGCCGGGAGCGAGCAGAGAGTGAGGCAGAATGTGCCAGTACTGGCCATGAAGACATGCCGGTGGAGAGGATTCTAGAAGCTGAGCTTGCTGTGGAACCAAAGACCGAATCCTACGGCGACATGAGTGTGGAGAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004537:ENSRNOT00000006117:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.277
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(82.9=95.1)
A:
NA
C2:
PF0010425=Hormone_recep=PU(28.7=42.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]