HsaINT0144767 @ hg38
Intron Retention
Gene
ENSG00000167100 | SAMD14
Description
sterile alpha motif domain containing 14 [Source:HGNC Symbol;Acc:HGNC:27312]
Coordinates
chr17:50117407-50118327:-
Coord C1 exon
chr17:50118161-50118327
Coord A exon
chr17:50117696-50118160
Coord C2 exon
chr17:50117407-50117695
Length
465 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
3' ss Seq
GCGGCTGCCCCCTCGTCCAGGTG
3' ss Score
8.22
Exon sequences
Seq C1 exon
ACCTGGACTTGGCTGTGCCAGAGACGGCCAGACTGGACAGCAGTTTACACAAGGCCCGGGCCCAACTGTTGGCCAAGGGCCGGAGACACCGGCCATCCCGCTCCAGGCTTCGGGACAGTGCCAGCTCCGCGGAGGATGGTGAAGGCTCGGATGGGCCCGGAGGCAAG
Seq A exon
GTTGGGGCAAGTTAGGAAAACACATATACACCCTCCCACCCCTCCCTCTCCTCCCACCCCTGGATAATCTCTCCAGAGTGCTCTTCCAGGGAAACCACATCCCCAGACTCCTGACCTAGTAATGCTGCCAAGTGTTAGCTGCAGTTCACTTCTGGCTCATTTAATCCTGTGTAAAGAAGATATTATTAGCCCCATTTTACAGCTGAGGAAACTGAGGCCCTGAGAGGTCCAGGAGCAAAGTCACAGTAAGTGAAGGAGGGGGAATTCAGCCCCAGCCTGTGTGACTCAAAGTTCCTGTTTCCCACCTCTCACTCTCCAGCCACCCCGCTGCCTAAGGCATGAGGAAACCCTCCCTCTAGGCCCCGGAAGGACCCTCAGGGCCCGCAGTTTACAGGGTGAAAGTCTCCCAGCTCCTCCGGGAAGGGAGGAGGAGGGTTCTCGGTGAGCGGCTGCCCCCTCGTCCAG
Seq C2 exon
GTGACCGATGGCTGCGGGAGCCCCCTGCACCGGCTGCGCTCGCCTTTGCACTCAGGCCCGGGGTCCCCGGCCGGGGGCTCTTTCTGCCTGGATCCTCCGGGGTTGCGGCGCAGCCTGGACGAGGACGAGCCGCCGCCCTCGCCGCTCACACGCTACCGGCCCCTGCACAACGCTGCGTCGCACGAGGGCCTGGCCGCCGCCTCCTGCTCTCCGCCGCGCTCCGCGCCCTCCTCCGACAGCTCCCCCAGCTTCGTGCGCCGCCACCCGCGCGCAGAGCCGCACAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167100:ENST00000330175:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.988 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGGCCGGAGACACC
R:
CTGGGGGAGCTGTCGGAG
Band lengths:
343-808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development