MmuINT0138651 @ mm10
Intron Retention
Gene
ENSMUSG00000047181 | Samd14
Description
sterile alpha motif domain containing 14 [Source:MGI Symbol;Acc:MGI:2384945]
Coordinates
chr11:95019361-95020218:+
Coord C1 exon
chr11:95019361-95019527
Coord A exon
chr11:95019528-95019929
Coord C2 exon
chr11:95019930-95020218
Length
402 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
3' ss Seq
AACCGCTGCCCCTCTTCTAGGTG
3' ss Score
9.74
Exon sequences
Seq C1 exon
ACCTGGACTTGGCTGTACCAGAGACCACCAGACTGGACAGCAGCTTACACAAAGCCAGGGCTCAACTGCTGGCCAAGGGCCGGAGACACCGGCCTTCCCGTTCCAGGCTACGAGACAGTGCCAGCTCTGCCGAGGACGGTGAAGGCTCTGATGGGCCCGGAGGCAAG
Seq A exon
GTTGGGGTAACATACACACACCAACATCCTACCCCTGGACCATACCCCCTCCCTCACGCTTCCAGGGAAGTGTGTGCCCCCGGAGATGCTCCCAAAGATCAGTTAGCAGTTCACTTCTGGCTCCTGTACCTCTGTACAGGAAAAGGGATTGTTAGCCCATTTTACAGATGAAGCTGAGACCAGAAGGTTCGGGAAGTCCCATTAACTGTGGGATGTGCAAATGAAGCAGGATGTCTTCACTTCTTGTGAGAATCCATTTCTCCAGCCCCGGGTCCCAGAATACCTGCTCTCCAGACCCCAAGAAACAGAGCTTCCTTGGCGCTCCTGTACAGCCGATGGGGGAAACTGGCCTCCATCCTCTGGGAAGTCAGGGGGGACGCTGAACCGCTGCCCCTCTTCTAG
Seq C2 exon
GTGACCGACGGCTGCGGTAGCCCGCTGCACCGGCTGCGCTCGCCTCTACATTCGGGTCCAGGCTCCCCAGCCAGTGGATCTTTCTGCCTGGAGCCCCCGGGCTTGAGGCGCAGTCTGGATGAGGACGAACCGCCGCCCTCGCCACTCGCTCGGTACCGGCCCCTGCACAACGCCGCCTCGCATGAGGGCCTGGCCGCCACCTCCGGCTCGCCACCACGCTCTGCACCCTCCTCCGACAGCTCCCCCAGCTTCGTGCGTCGTTACCCTCGAGCAGAGCCGCACAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047181:ENSMUST00000055947:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF153271=Tankyrase_bdg_C=FE(88.7=100)
A:
NA
C2:
PF153271=Tankyrase_bdg_C=PD(6.5=6.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAGGCTACGAGACAGTG
R:
CTCTGCTCGAGGGTAACGACG
Band lengths:
344-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types