HsaINT0145266 @ hg38
Intron Retention
Gene
ENSG00000064932 | SBNO2
Description
strawberry notch homolog 2 [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr19:1107636-1108969:-
Coord C1 exon
chr19:1108779-1108969
Coord A exon
chr19:1108705-1108778
Coord C2 exon
chr19:1107636-1108704
Length
74 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CCCCGACGCTCTGCCCGCAGGCA
3' ss Score
10.92
Exon sequences
Seq C1 exon
GAACCGGCACTGCCGGCTGGCGCAGGAGGGTAAGGACTGCCTGCAGGGGCTGCGGCTGCGGCACCACTACATGCTGTGCGGCGCGCTGCTGCGCGTGTGGGGCCGCATCGCCGCCGTCATGGCCGACGTCAGCAGCAGCAGCTACCTGCAGATCGTGCGGCTGAAGACCAAGGACAGGAAGAAGCAAGTGG
Seq A exon
GTGAGTGGGCGGCGGGCGCCCCGGGAAGGCCCGAGCCCCCAGCGCCGGCCCTGACCCCGACGCTCTGCCCGCAG
Seq C2 exon
GCATCAAGATCCCCGAGGGCTGCGTGCGCCGGGTGCTGCAGGAGCTGCGGCTGATGGATGCGGACGTGAAGCGCAGGCAGGCGCCCGCCCTGGGCTGCCCCGCCCCGCCCGCCCCGCGCCCGCTGGCGCTGCCTTGCGGCCCCGGAGAGGTGCTGGACCTCACCTACAGCCCCCCGGCCGAGGCCTTCCCGCCGCCCCCGCACTTCTCTTTCCCGGCGCCGCTGTCCCTGGACGCCGGCCCCGGCGTCGTGCCGCTGGGCACCCCCGACGCCCAGGCCGACCCTGCGGCCCTCGCGCACCAGGGCTGCGACATCAACTTCAAGGAGGTGCTGGAGGACATGCTGCGCTCGCTGCACGCGGGGCCGCCCTCCGAGGGCGCGCTGGGGGAGGGCGCGGGGGCGGGGGGCGCGGCGGGCGGTGGTCCCGAGCGGCAGAGCGTGATCCAGTTCAGCCCACCCTTCCCCGGCGCCCAGGCTCCTCTCTGACACGCCTTTAGGCGAAACATGCCCCAAGACACAGGGACCGTTTCTCCCCTAGGAGCAGCGGTGGGGAGCAGGGCCAAGGTCCCCTGACCACTGCTCAGAGGAGCCCTAGGCCCTGGCCGCAGTGCCTTCAGCGCCCGACCCGGGCCCCCACCTGGTCAGCCCTGGCGGGGCCCACTCAGGACAGCTGGGGGCCGGGGCGTGGCAGGGCCCTCTCTGTGCCTCTCCTCCCAAGTAGGAAGGGGCTCCGGGTGGCTGCTCTGGGACTGGGCACCCACAAGGGCTCAGTGGGCCCAAACCCTTGAAATCCGTGAAACCGGGTGGTCCCAAGAGCTAGAAACTCAGGAAACCCCAGGTGCTCAGGGCCCCGCGTCTCGGGGGCTCCGTGGGGCAGACCCCTGCTAATATATGCAATTCTCCCTCCCCCAGCCCTTCCCTGACCCCTAAGTTATTGCCCGCTCACCTCTCCCAGGCCCCAGGCCGCGGAGCTGGCAGGGTGGCGCCTGCGGTTTCTATGTATTTATAGCAAGTTCTGATGTACATATGTAAAGGACTTTTTTAAATATATGTGCCTTTTGCCTACTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064932:ENST00000361757:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.540
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAGGAAGAAGCAAGTGG
R:
GTCCAGCACCTCTCCGGG
Band lengths:
179-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development