MmuINT0139127 @ mm10
Intron Retention
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:80056992-80058146:-
Coord C1 exon
chr10:80057956-80058146
Coord A exon
chr10:80057865-80057955
Coord C2 exon
chr10:80056992-80057864
Length
91 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GTATGTCCGCGCCACCACAGGCA
3' ss Score
4.96
Exon sequences
Seq C1 exon
GAACCAGCGCTGCAGACTGACACAGGAGGGCAAGTGCTGCGCCCAGGGCCTGCGCCTCCGCCACCACTACATGCTGTGTGGGGCGCTGCTGCGTGTGTGGGGCCGCATCGCCGCTGTCATGGCGGATGTCAGCAGTAGCAGCTACCTACAGATTGTGCGCCTTAAGACCAAGGACAAGAAGAAGCAAGTGG
Seq A exon
GTGAGTAGAGCAGTGGGTGTGGGGTCCCTGGAGAAAGGGTTCCCTAGTATGGTCCCCAGGCGGGCCTGACTGTATGTCCGCGCCACCACAG
Seq C2 exon
GCATCAAGATCCCCGAGGGATGCGTTCACCGCGTACTGCAGGAACTGCAGCTGATGGATGCAGAAGTGAAGCGCCGCAGCACCCATGGGTTGGCAGCGCGCCCACCCACTCCACGTGCGATTACGCTTCCTTGCGGTCCGGGTGAGGTGCTGGACTTGACCTACAGTCCCCCAGCTGAGGCTTTCCCAACACCTCCGCGCTTCGCCTTCCCTTCGCTGCCGCCCCCAGACCCCAGCTCTCTGATGCTGGGTGCTAGAGACCCTGCTACCAACCCTGTGGAGCTGGCACACCAGAGCTGCGACATCAATTTCAGGGAAGTGTTGGAAGACATGCTCCGCTCTTTGCGCGCGGGACCCACCGAAACCCCTGCACCTCTGGTGGGCGTGGGTGGCGGGGGCACAGAGCGACAGAGCGTCATCCACTTCAGCCCACCCTTCCCAAACTCTTAGGCTGCTACTTCAGCCTCTGGATTACAACTGTACTGGGCAGCAAGGCCTATGGGCTCCTCTGCAAGCAGAGGCTCCCATGACTACTGAGGTGCCTGGCCACAGTGCCTTCCCAGCCAGTGGGGAGTGGGGCCTCTCTGTGCCTCACCTGCTACAGCTGCGCAGCCTAGAAGCCGTGGGGCTTGGTTGTCCCAGAGAGCTGGTAACTCAGGAAATCGGTGCTCGGGCCCCGCTGGCTATGGGGGCTCCACGGGGCAGACCCCGTTAATATATGCAATCCCCTGCTCCCTAAATTATTGTCACCCGCCTCTCCCCAGCCCCGGAGTCTGTGGGCAGCCGGCGGGCCCTGGTTTCTATGTATTTATAATGAACTCGTGTACATATGTAAAGATCTTTTTTAAAATATATGTGCCTTTTGCTTACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673:ENSMUST00000219260:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.555
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACTACATGCTGTGTGGG
R:
TTCCTGCAGTACGCGGTGAA
Band lengths:
174-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types