HsaINT0145330 @ hg38
Intron Retention
Gene
ENSG00000140497 | SCAMP2
Description
secretory carrier membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:10564]
Coordinates
chr15:74845473-74848701:-
Coord C1 exon
chr15:74848600-74848701
Coord A exon
chr15:74845594-74848599
Coord C2 exon
chr15:74845473-74845593
Length
3006 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCCTCTTCTTCCCTTTATAGCGG
3' ss Score
11.22
Exon sequences
Seq C1 exon
GTCCGACAACTCTTTCAGCTTCTTTGTGTTCTTCTTTGTATTTTTTTGTCAAATAGGGATCTACATCATCCAGTTGGTTGGCATCCCTGGCCTGGGGGACAG
Seq A exon
GTGAGACCTGGGCATCACAGAGGGAATTAGGCTTTGGATATGGGACTCAGCCTCTCTTGCCCTGTTTTCTAGCTCCCACAGAGCCCCGCCAGTGCCCTGCTTTTCCCATGGCGGGGAGTGGGTGAGTGGGCCAGCTCGGATCTGCTTTGGGCCTTCTCTCCAGTTCTTCATCAGTAGCCACTCACTTTTTTTTTCTCCTTGATACTAAAGGCATCAAAAGACACTCACTATTGGTCAGGTGCAGTGGCTCATGCCTGGAATCCCAGTACTTTGGGAGGCCGAGGCAGGCAGATTGCTCAAGCCCAGGAGTTCGAGACAGCCTAGGAAACACAGGAAGACCTTGTCTCTACCAAAAATTAAAAAAATTAGCCTGTTGCAGTGGCATGCACCTATAGTCCCAGGTACTTGGGAGGCTGAAGCAGGAGGATCACTTGAGCCCAGGAGGTTGAGGCTGCAGTGAGCCATGATTGCACCACTGGACACCAGCCTGGGTGACAGAGTGAGATCCTGTATCAAAAAAAAAAAAAAAAGACACTATCTTCCCTTGCTCTCCACTTTCCAGGGTATTGTGGGTGAACTTGGCTTGACTCTTTAGGCTACCATGACAGTGTCCTGCACTGGATTGCAGCCTCTTCCTTTTCTCCTGCCACACCCTCCTGAAAGCTGATGGATGCCCAGGCCTTTGCAGACTCTGAGCTGCAACTTTTTCCAGATGCCTTGTAACTTAAGGAGACGGTTCCCTCACCTCCCCTGGACAGGCTTCTTCTGGCTGCCCTCTTTGAGCATACGGCTGGTTTGAGTTTCCAGGGTACCTCAGTCCTCAGCTCAAAATTAATCTCAAAAGAAAAGCTGATGGCTGATGTTTTCCTTTCTGCCCCAGTGCACAGGGAGCATTGCAGAAAGGTCAGACTGGCACTTGGCTGACAGCCTGAGCCTGGAAGGGCGGTGCTATTTTGGTCCCCTCCCTCTGGCAGAGCTGGCAAGTCCAGAGCAGTGGGGAGAGAAAGGTTGCCTCCCCTTGCCCTCCAAACAAGTGCACGCTGCCCTCCCACCACCCCTCATGCTTCTTGCCCTGCTGTTGTTAATCTGGTCCCTTTTGACCAGTGACCCAATTTCATTACTCCTTACCTAAGTAAGACCCTGGTAGAAAAGCTGTGATTCATGACTGCCGTTTGCACCTGTACTGGGAATCAGAAGGCTTGAGTTGGCTGGGTGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACCTGAGGTCAGGAAGGAGTTTGAGACCAGCCTGGCCAACATGGCAAAACCTTGTTTCTAGAGAGTACAAAAATTGGCCAGGCGCATTGGTAGGTGCCTATAATCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATCACTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCGGGATCACACCACTGTTCTCCAGCCTGGGCTACAGAGCAAGACTCAATCTCAAAAAAAAAAAAAAAAAAAAAAATTAACTGACAATAGGTGTATGGGTTTATTTCTGGAATCTCAGTTCTATTCCATTGATCTATTGATCTATATGTCTATGTTTATGCCAGTCCTACACTATTTTAGTGACTGTAGCTTTGTAGTAAGTTTTGATGTCAAGAAATATGAGGATATCCCTTTTACAGATGAGGACATGGGGCTCAGACAGGTGACAGCAAGTTGGCCAGTGATCCTCCTTCACAGAAGGTGGGTCCTCAGGAGTGAGCAGCCACGCTTTCCATACTCCCCACCCCCAAAGCAGCAGAAAAAGGCCCGGCCCAGTGCTACCTTTTTAATTAATTATTTTTTGAGATGGAGTCTCTGTTGCCCAGACTGGAGTGCAGTGCCGCGATCTCTGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAACTGGGACTATGTAGGTGCCTGCCACCATGCCTGGCTCATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTGCTGACCTCGTGATCCGCCCATCTTGGCCTCCCAAAGTGTTGGGATTACGGGCTTGAGCCACTGTGCCCAGCCCTTTTTCTTTTTTCTTTTCTTTTTTTTTTTTTTTTGGAGACAGGGTCTCACTCTGTTGCTCAGGCTGGAGTGCCGTGGCGTGATCACAGCTCACTGCAGCCTTGAACCTCACGGGCTCAAGTGATCCTCCTACCTCAGCATCCCAAGTAGCTGGGAGCATAGGCATGTATGACCACAGCCAGCTAATTTTTTTTTTTTTTGAGTTGGAGTCTCGCCCTGTCACCTAGGCTGGAGTACAATGGCATGATCTCGGCTCACTGCAGCCTGCACCTTCCAGGTTCAAGTGATTCTCCTGCCTCAGTCTCCCGAGTAGCTGGGATTGCAGGCGTGTGCAACCACGCGCAGCTAATTTTTGTATTTTTAGTAGAGCAAGGTTTCTCCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTGCCTTCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCACGAACCTGGCCTTTTTTTATTTTTTATGGAGACAGGGCCTCCCTCTGTTGCCCAGGTTGGTCTTGAACTCTTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGAGAGCCATAGCACCCAGCCCGGTGCTACTTCTGACTCTGTGAAGGCAGCAACCACATCCTCCCTTTCAGACCTCACATAACCAGAAGATTCCCCTTGTGAATGGGGTAGTGTGGGCCTGTCAGCCTTCACGGAGGTCTGGCCTCACAGGCCAAGGGCTTCTGGCTCACAGGGCTCCCTGTGCTGTGGGGAGATGCCAAGGTGATGGTCAGGACACAGCAGCCACTTGGAGAAGAGCCCCTTATGCTGACTTTTGGAGCCCACTCCCACTTTGCTCCCTCTGGCCTCTTCTTCCCTTTATAG
Seq C2 exon
CGGTTGGATTGCAGCCCTGTCTACACTGGATAATCATTCCCTGGCCATATCAGTCATCATGATGGTGGTGGCTGGCTTCTTCACCCTCTGTGCCGTGCTCTCAGTCTTCCTCCTGCAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140497:ENST00000268099:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.0=100)
A:
NA
C2:
PF041448=SCAMP=FE(22.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development