MmuINT0139192 @ mm9
Intron Retention
Gene
ENSMUSG00000040188 | Scamp2
Description
secretory carrier membrane protein 2 [Source:MGI Symbol;Acc:MGI:1346518]
Coordinates
chr9:57430659-57435007:+
Coord C1 exon
chr9:57430659-57430760
Coord A exon
chr9:57430761-57434886
Coord C2 exon
chr9:57434887-57435007
Length
4126 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTGCGTTCTCCTTTTGTAGTGG
3' ss Score
8.86
Exon sequences
Seq C1 exon
GTCTGACAACTCTTTCAGCTTCTTCGTGTTCTTTTTTGTATTTTTTTGTCAAATAGGGATCTACTTCATCCAGTTGATTGGCTTGCCTAACTTGGGGACCAG
Seq A exon
GTAAGACCTGAGCCGAGGCTCGGCTTCCTCGCCATTTCCTAGCTCCCAGCAAGCCTGTTTGGACCATGGTGGACAAACGGTGGTGGGTTGTGTGATGAAACATTTCCTGCAACTCACACATCCACTCAGCTCAGATAGGGTATAGCTCAGATAGACCAAAGTAGTGGTACCACCAAAGTCCAGCTTGGTGAACCAACGAGTTTTATTGAGGTTACTTACAAGGATATGGGTGAAGGGTAACTTGCAGGAGCAGAAGTAACTCAAAGGCAGCTGTATCATCAAAGTCCACCCCAGCATGGGTGACAGCACAGCCTGAAGGTAGCTCAGCAGCGTGGAGAAGTGTCCTTTTCAAATGACTCTCTGGCCCATGCTCTCGGGCAGCTGGCCCGGTCTCAGGAGTCCTCCTAGCAGGTCAGCTTGCCTGAGAGCATTCTTCTAGCTTAGTCTCTCTCGTCAGAGGGGAACACTCAGCTTTTATTACCTTCTTTGGCAGGAAGGGGTAATCCCCTTCCTGGTCAACTGAATCCGGTCAACTTCAGGGACTTCCTGAAGCTATTTTGAGTTGTTAGTACACTAGGACGGAGTGTTTTAATCTCCATGGAAACTCTATGCAATGCCTCTCTCCTGGTCCTTTTCTCTTTTGGGGATCCAAGGGGTCAGACCCAGAGCCTTGCACATGCTAGAAAGTACTCTGTCCCTGAGCCACAGCCCAGCTTTCTGTTATTTTACCAAAGTAGTTGTCTTTCCTTGTACTCTTCATTCCAGAGTGTGTAGATGAGAGCGTCTCACTCTGGCCTGGAACTTGCTATAGGCCAGAGTGGCTTCCAATTCATGGTGATCCTCCTGCCTGTCTCCAGAGAGCTGAGAGTTCAGGTTTAAGCACCTTGCCAGTTTGGGTTAGGCCTTTAGGGCTGTGTCTGCCACTGTCTGGCAAGTTCTTGCTTTACTCTTAGTGCATCCTCAGAGAGGCTGATGGATCCCTGGCCTTTGAAGCCCCTGACTTACACATTAGCTCTCTTAAACTCACTATGTAGCCCGAAAATGACCTTGGACTTCTTGTCATTCTGCATCTAGGCGGTACCTGTTGTTTTATGTGGAACTTGGGATGGAATCCAAGTTCTCATGTGTGCTAGGCAAGTACTCTGTCAGTGGAGCTACAGCCTTAGCTCCCGTCTTACTTTTTCTCTCAGGGCCTTGTGATTGCAGAAGGTGGTGTCTGCCTCCCTGGAGAGGTGTCTTGCTATTCTGGAGCATATAGCTGGTTTGAGTTTCTTGGCACCTCGGTCCTCAGTTCAGAGTTAATTGCCGAAAGAAAAGCTGATGGCTGGCGTTTTCTTTTCTATACCAGTGCACAGGGAACATTGCAAAATGATGGGGTTGAGAGCAGGAGTCTGGGAGGGTGGCACTATTTTAGTTGCTTGTCACAGCAGGGAGCACGTACAGAGTGTAAGGAGAGGACTGGCCATCCATCACACTGGCACCCTGAGCCTGAGCACACTGCCGTCCTGCCACCCTGTGACCTTATTCTGTGTCCTAATCCCCACCCTTTTGGTGGATAGTCCAGCTTCATTATTACTTTAAGTGTGGGTGGCCCGTGTCTGTGATCCCAGCACTTGGGAGATGAGGCAGGATGACTGGAAGCTTAAGGTTAGCCTGGGCTATGCAATAAGTTCTGGGCCAGCCTGGAGAACCAGGGTCTCAAAAAACAAATAAGCTGAACATGGTAACACACTCATTTAATCCCAGCACTCAGGAGGGCAGAGGTAAGTGGATCTCTTAGTTTGAGGCGACCCTGGTCTATATAAAAAGATCTAGGATCGCTAGGGTTACATAGTAAGACAGTGGCTCAAAGCAAACAAACAAACAAATAAATGGGGTGGGGTGGGGTGGGGTGGGGCATGCTACAATTAATATTTGCACTCTCGACAGAGTCTGAGGTTTGTGGTCTGGTCCTGACCCTGCCTTCACTGCCTTGAACTCAGTAAGCTCAGCTGGCTCCTGCCTGTTCTTGCCTTCCCTTAGACCTTCTGTGATCATTTTCTTTCCTCTCTGTGTGTATGTGTATGCCCATGTGTCCATGCGTGTTCATGTGGGGTCACATGTATACACCTCAATGTGGAAGCAGAGGTTGAGATTTGTGAGTCAGCTCTCTTCTTCCATTGTGTGTGTTCTGTGGATCAGACTCGGGCTGTCAGATGCAGTGGCAACTCCTTCCCCTGCGGAGCTGCTTCCTGCCTCTGCAGTGCTCTTTGCTGCTTTTGCTTTTAGTGTTACACTTCAGTGTCATGAAACTTACTTCCTGTTTTCTTCTACAAGTTCATTTGTTTGTTTTTTTGAGACAGAGTCTCTCTGTGGTCCTTGTCATCCTGGTTACTATGTAGACCTGGCTGTCCTAGAATGTATGTTCTTCTGCTTCTGCCTCCCCAGTACTGGGGACTAAATGCATGTACCACCATGCCTAGCCTTTCCAAGAGTTTTATAGGTCTTACAATTAAATCTTTGTCCTACTTTGAGTTAATTTTCATGTATGATTAAAGTAAGGATCAGTTGTTCAGATACCATTTGTAAAGAGACCATCAGTTTCCCTTTAGGGTGTTAACAATTTTTTTTAAAGATTTATTTATTATATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGTGTCAGATCTCATTACAGATGGTTGTGAGCCATCATGTTGGTTGCTGGGAATTGAACTCAGGACCTTCGAAAGAGCAGTCTGTGCTTTTAACTGCTGAGCCAACTCTCCAGCCCCAACAATTTTTTTTTTATTATTCCTTGTATTTATCAGGAGACCGGGGAGGGGGAGCATGCATGCCAGGACATGTATGTGAAGGTTCCAGGATAAGTTCTTCTCTTCCACCATGTGGGTCCTGAGTATCAAACTCTACCACCAAGCTTGGCATCAAGTACCTTCACCCACTGAACCACCTCTCTATCCCCTTGGTTTTAGGACCCTAAAAAATAGATTGGGGGTTCTGGAGAGATGGCTTGATGGTTAATAGCACTGGCTGCTATACCAGAGTATCCTGGTTCAATTCCTAGTACCCACATGGCAGCTCACAACTGTGTGTGGCTCTGGTTCCAGGGGATCTGACACCTTCACACAGACACAACAACAATGCACAGAAAAAAAAAAACTGAAAAACAATTTTTTTTAGAATTATTTATTTATGTATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCACTGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTAGCCAGGAATTGAACTCAGGACTTCTAGAAGAGCAGTCAGTGTTCTTTTCTCTCTCTTTTTTTTTTTGTTTGTTTGTTTTAAAGATTTATTTATTATTATATCTAAGTACACTGTAGCTGTCTTCAGACGCACCAGAAAAGGGTGTCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAACAGTCAATGCTCTTAACCGCTGAGCCATCTTGCCAATCCCCAGAAAATAATTCTAAAAATATGTACATCTGGACACTGAAGCCTATGGCATTGCTCTTCCCGCTATTCCGACACTGCTTTGATCCCTGTAGCTTTGTTGTAAGTCTTGACATCAGGTAGTGTGAGAATAATCCCTTTACAGCTAAGGACACTGAGGCTCTGGGGGGTGACAACCACTAACAACTGAGGTGACAGAGTAGAGGCAACAGGCTGGCCAGTGCTCCTCTCGCCAGAGTCCTCTGTGAAAGCCCGGTCTTCCCAGTCCCCCCCCTCAGTCAGCAGCACTGAGCTTTGGGCTGCTCCTGGCAAGGGGCTTGCTGTATCTCCTTTCCAAACCTCACTGGGCAGGAAGACATGACCCCACCTCTGAGACCTCAGGAGAGCTCATGCTGGGCCGGTGTGGGCCTGTCAGCACTCACAGCCTGTTCACTCACAGAGAAAGGTCATTGAACCACAAGGCTCCCTGTGCGGCTGGGAAATGTCCAGGTGGTGGTCAGGACACAGCCATTTGGGAGAAGTGCTCCTCTTGGGGACTTCTGAGTCTCAATCTTACCTCACCTCTGCGTTCTCCTTTTGTAG
Seq C2 exon
TGGTTGGCTTGCAGCCCTATCTACGATGAAAAATGGGCCCTTAGCTGTGACCATCATCATGATGGTAGTGGCTGGCTTCTTTACCCTCTGTGCTGGGCTTTCACTCTTCCTCCTGCAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040188-Scamp2:NM_022813:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.0=100)
A:
NA
C2:
PF041448=SCAMP=FE(22.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: