HsaINT0146370 @ hg19

Intron Retention

Gene

ENSG00000165689 | SDCCAG3

Description

serologically defined colon cancer antigen 3 [Source:HGNC Symbol;Acc:10667]

Coordinates

chr9:139300357-139302013:-

Coord C1 exon

chr9:139301597-139302013

Coord A exon

chr9:139300431-139301596

Coord C2 exon

chr9:139300357-139300430

Length

1166 bp

Sequences

Splice sites

5' ss Seq

GCAGTAAGT

5' ss Score

9.07

3' ss Seq

AGGATGTTCTCTCTCCACAGCTG

3' ss Score

9.96

Exon sequences

Seq C1 exon

GAAGCCTCGAGGCATTCCCTGGGACTTGACCACAACTCCCCACCCTCCCAAACCGGCGGGTATGGCCTGGAGTATCAGCAGCCATTTTTCGAGGATCCGACAGGGGCTGGTGACCTCCTGGATGAGGAGGAGGATGAGGACACCGGATGGAGTGGGGCCTACCTGCCGTCCGCCATCGAGCAGACTCACCCCGAGAGGGTCCCTGCCGGCACGTCGCCCTGCAGCACATACCTTTCCTTTTTCTCCACCCCGTCGGAGCTGGCAGGGCCTGAGTCTCTGCCCTCGTGGGCGTTGAGTGACACTGATTCTCGCGTGTCTCCGGCCTCTCCGGCAGGGAGTCCTAGCGCAGACTTTGCGGTTCATGGAGAGTCTCTGGGAGACAGGCACCTGCGGACGCTGCAGATAAGTTACGACGCA

Seq A exon

GTAAGTGAGCCTCACGGCGCCCTCTGGCACAGCGCCTGTCCGAGCGGCTTCTCCCGGGGAGAACCTGGAGCCATCCTACCTCTTGGGTGGCCTGGTTTGATTTCCAGGACAAGGCGATTTGCGTGACAGCCTGCTATCCACTTTCCCTTTGACTTTGCTTCTGGTTACACGTGGGAATAGAACCGGCTAAAGAGGACTGGTGAGCTAGAAGCTGTGAATTGGATGCAGTTGGGCACTTACAGGGCTGTACCCTCAGTAAAGGCAGGCTGCAGTCGCCAGCTTGCTAAGTATTCCAAGAGGAGGAAAATTTTTAAAAAATTATAATCACCTAAAAGGTTATAAGCTCTGAATAAAAAAAAAAATTTTTTAGCTGGGCGCCGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCAGCAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTGAAAATACAAAAATTAGCTGGGCGTGGCGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCGGTGAGCCGAGGTCACGCCACTGTACTCCAGCCTAGGCGACGGGCGAAACTCTGTTTCAAAAAAAAGAAAAATTATTTTCTTCCTGAGACAGTGTCTCACTCTGTTGCTCATGCTGGAGTGGAGTGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCCGAGTTCAAGTGATTCTCCTGCTTCAGCCACCCGAGTAGTTAGGACTACAGGTGCCCGCCACCACTGCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGGTTTCACCGTGTTGGCCAGGCTGGTCTCAAACTCCTGACCTTGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGCGAGCCACTGCCCCCGGCCTCTGAGTAAAATTAACTGGCATCTGTGACCACAGGTCTTTGAAAAGTGCCTGCCTCCGTCTGTGGTCTCCCTCTGTAGTGGCTGCAGGTGGATGCTGCACTGACCCAGCATCTCTGCTTATCAGGAGGCTCTGGAGCCACACCGCAGAAGCACACGCCCTTTTGAGCCAGACATGCTGACTTTCTAATAAGGATGTTCTCTCTCCACAG

Seq C2 exon

CTGAAAGATGAAAATTCTAAGCTGAGAAGAAAGCTGAATGAGGTTCAGAGCTTCTCTGAAGCTCAAACAGAAAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000165689-SDCCAG3:NM_001039708:3

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

No protein impact description available

No structure available

Features

Disorder rate (Iupred):

C1=0.727 A=NA C2=0.183

Domain overlap (PFAM):

C1:

PF0076914=ERM=PU(8.9=11.5),PF131661=AAA_13=PU(8.9=10.8),PF0026115=Tropomyosin=PU(10.8=8.6),PF143571=DUF4404=PU(0.1=0.0)

A:

NA

C2:

PF0076914=ERM=FE(13.4=100),PF131661=AAA_13=FE(14.2=100),PF0026115=Tropomyosin=FE(21.6=100),PF143571=DUF4404=FE(36.4=100),PF052669=DUF724=PU(21.1=80.0)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000349929