MmuINT0140195 @ mm9

Intron Retention

Gene

ENSMUSG00000026927 | Sdccag3

Description

serologically defined colon cancer antigen 3 [Source:MGI Symbol;Acc:MGI:1915362]

Coordinates

chr2:26241510-26242831:-

Coord C1 exon

chr2:26242424-26242831

Coord A exon

chr2:26241584-26242423

Coord C2 exon

chr2:26241510-26241583

Length

840 bp

Sequences

Splice sites

5' ss Seq

GCAGTAAGT

5' ss Score

9.07

3' ss Seq

GACTTTTTTTTTTTCTACAGCTG

3' ss Score

10.83

Exon sequences

Seq C1 exon

GAAGCCTCAAGGCACCCACTGGGACTAGAGCACAGCTCCCCTGCCTCCCAGCTCATGGGATATGGCCTGGAATCTCAGCAGCCATTTTTTGAAGACCCAACAAGAGCCAGCAACCTAGAGGAGGATGAAGATGATGGATGGAATATAACCTACTTGCCATCTGCCGTGGATCAGACTCATTCCTCTAGAGACACACAGGACTCACCGCCCTGTGACACCTACCTTTCCTTTTTCTCCAACTCGTCAGAGCTGGCATGTCCCGAGTCTTTGCCCCCATGGACGCTGAGTGACACCGACTCCAGGATCTCCCCAGCGTCTCCAGCTGGGAGTCCTAATGCAGACTTTGCAGCTCATGAAGAATCCCTAGGGGACAGACACCTGCGGACGCTGCAGATAAGTTATGAAGCA

Seq A exon

GTAAGTGAGGGCAGTGTGGCACCCAACACAGCTGAGCTGTGTTGTGGAGAGGAGCTGCAGTCATCTACTTCCTGGGTGGCCTGGGCTCAATGCCACGGACAAGGCAGTTAGTCATATAATGGCTTGATGTAGAATTGCCCTGAAGAGGGGTCTAAAGATAGAGATAATAGATAGCTCAGTGGTAATTTTCTCCTAGCACTTGGAAAGTCCTGGGTTAGATCCTGAATGCTGAAAAATAAGAGAGAAAAAGGAATTTCTCTATGGAGAGCTCTTCCTTGGGTTGGTTTTGGCTGTGCAGTTAGTATAGCAGACTGAGAAGTACTGTGGTGAGGTCACAGGCAGGCAGACACGAGCTAGCATGAAGAAATGGTCTATTGGAAGTGTTGGCTAAGAGTCATCTTGCTGAATGCCCCACATGATGGAAGGCCTTAAAACCATAAGTCACCTAGAAAAAGTAAAGTGTGTGGCCACAGGTCATCTTCTCCTCCTCCATCACTTGAGGGTGATGCCATTTGACCTGAGCTGTTTATGTTCCAGAGCTGGGCATGGAAGTACGCAACTGTCATCCCAGCGCTGGAAGGTGAAGGCAGGAGGAAGAGACGTGCAAGGCCATTCTTGGCTACATGGGAACAAGTAAAGGGCAAACTAGGTTGCAGGAGATGCTGTCTCAAAAAGACATTTCATGGACACATGGGATGCATCTTCATACCTCTTGGCCCGCCCCGAATGCATAAGGCTCCACCTCCAGACCCACAAAAGAGAATATTTCAGAACAGAAGCATGTTCGCTTGTGAGGGAGACATACCGGGTGTCTAATGAGGACTTTTTTTTTTTCTACAG

Seq C2 exon

CTGAAAGATGAAAACTCTAAGCTCAGAAGAAAGCTAAATGAGGTTCAGAGCTTCTCTGAAACTCAAACAGAAAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000026927-Sdccag3:NM_001085408:3

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

No protein impact description available

No structure available

Features

Disorder rate (Iupred):

C1=0.794 A=NA C2=0.480

Domain overlap (PFAM):

C1:

PF0076914=ERM=PU(10.6=14.0),PF0026115=Tropomyosin=PU(12.9=17.6),PF131661=AAA_13=PU(16.7=14.7),PF138631=DUF4200=PU(1.9=1.5)

A:

NA

C2:

PF0076914=ERM=FE(13.3=100),PF0026115=Tropomyosin=FE(12.9=100),PF131661=AAA_13=FE(20.0=100),PF138631=DUF4200=FE(23.3=100),PF052669=DUF724=PU(21.0=84.0)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000109737