HsaINT0147128 @ hg38
Intron Retention
Gene
ENSG00000007908 | SELE
Description
selectin E [Source:HGNC Symbol;Acc:HGNC:10718]
Coordinates
chr1:169730432-169731942:-
Coord C1 exon
chr1:169731835-169731942
Coord A exon
chr1:169730618-169731834
Coord C2 exon
chr1:169730432-169730617
Length
1217 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GATTTGGGTTTCTTTTTCAGTTG
3' ss Score
9
Exon sequences
Seq C1 exon
CTGCCTGTACCAATACATCCTGCAGTGGCCACGGTGAATGTGTAGAGACCATCAATAATTACACTTGCAAGTGTGACCCTGGCTTCAGTGGACTCAAGTGTGAGCAAA
Seq A exon
GTAAGTCTGGTTCTTGCCTCTTTCTTCACTTGAGATGGTAGCACCATCTCACGTCCTAGCTGGCATTAGAGTCAGGTCTGCATGCCTTCCCTTCCCTGGTGCAGATGGTGTCATATGGTGATCGTGAGCTGAGACTATGAAGTCAGACCCTGCTGGGTTTGAGTCCTAGATTCACCAGTTATTTATTTTGGCACCTTGACAAGATAGTTTAACTCTCTATGTCAGTTTTCTCATTGTAAAATGAGGATAATAATAGTGTGAACTTCATAGGCTCATGGTTACATGGTGCCTGGCACACAGGACACATTCAATAAACTGTAATTCTGTGTCCCTGCGAGGAACATGTACTCACCTCATCTAGGTGGTAACAAGACGTTGCAGTAGAAATGAGTGAGTTACAGAGTCCAGGGTATCTTGGTTCATGCTCTGGCCTCTGGCTCTGTAATGACTAGCCGTGTAGCATGGAGCAAGTCACTTGAATGAAATGAGGTCTCAGTTCCTAAATTTGTACATTAAGAGAGTTAGATGAGCTTCTCTCCAAGATTCCTTAGCACAGCGTTGTGCAGTAGAGCTTTTGTGATAATGGAAATGTTCCATAGCTGTGTTTTCCAGTGTGTACCTATGAGCCACATGTGGTTATTGAGTACTTGAAATGTGGCTGGTGACACTGAGGAACTGAATTTTAAATGTTATTTGATTTCAACGAATTCAAGTTTAAATTTGAGTAGCCACACAGATAGTGGCTACTATAGTAGACAGTGCAGCATTAGGGTTTTAAAATTTGTAATGTATTCTAGTACTTAAATTTGAAATATAGCTTTGTGAATGGTTCTCATCCTGGTTGGAAGCTTACTGTAGTATTTTTAGCAGTTGTGAGAAAAGTAACAAGAAATTTGTTGTGGTACCTAAGTTTGCTGTGTTTGTTCATATAATTTGAACAGTTTTGAGGTAAACACAATTACACTACTCTCCCCATATCACTCAATATTTCTTTTTTATGGTTGTCATCACTGCTTTTTTGTTGTTGTTGTTATGGATCAGCATTTTCTTGAATAAAAGAAAAGGGGTAGAATTACAGTCAATTTTACAAATTCCATTAGAAATTTTATAAATTTTTAAACTAAAAAAAAAAAAAACCAAACTGTAGTTCTAGTTTCCAGTGTTCTTATCTGTTAAAGGTGAGAGATGAGCAGAACTGATTTGGGTTTCTTTTTCAG
Seq C2 exon
TTGTGAACTGTACAGCCCTGGAATCCCCTGAGCATGGAAGCCTGGTTTGCAGTCACCCACTGGGAAACTTCAGCTACAATTCTTCCTGCTCTATCAGCTGTGATAGGGGTTACCTGCCAAGCAGCATGGAGACCATGCAGTGTATGTCCTCTGGAGAATGGAGTGCTCCTATTCCAGCCTGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007908:ENST00000333360:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=83.8),PF0008415=Sushi=PU(4.7=8.1)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTGTACCAATACATCCTGC
R:
CATTGCAGGCTGGAATAGGAGC
Band lengths:
294-1511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development