MmuINT0140919 @ mm9
Intron Retention
Gene
ENSMUSG00000026582 | Sele
Description
selectin, endothelial cell [Source:MGI Symbol;Acc:MGI:98278]
Coordinates
chr1:165980211-165980963:+
Coord C1 exon
chr1:165980211-165980318
Coord A exon
chr1:165980319-165980774
Coord C2 exon
chr1:165980775-165980963
Length
456 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TGTTTTGTTTGATTTTTCAGCTG
3' ss Score
9.83
Exon sequences
Seq C1 exon
CTTCGTGTACCAATGCATCCTGCAGTGGTCATGGTGAATGCATAGAGACCATCAATAGTTACACCTGCAAGTGCCACCCTGGCTTCCTGGGACCCAACTGTGAGCAAG
Seq A exon
GTAAGTCTTGTCCTCACCTGTTTCTTCTCCAAGATGGTAACACCCTCTCCTCCCCCAGATGGCTTGTGATGGCTTGTCAGTCGGGCCCATGTGTTTCCTCTACTGAGTAAGAGTGATATAGTGGCTGAGACTATGAGATCAGATCCTCCTGGGTCAAACTGCAGACCTACTACCCGTATTACTTATGGCACCTTGACAAAGTAGTCCTGTAGGGTGACTGACGATTCCAGTTGTCATGAAACTAAATAACATCATGTGGCAATTAGCTGAAGCTTAGCGTTTTAGGTTCCAGAGAACGACAAAGAAACTGTTTCATAGTCTGATGGTTCCATAGAGCCTGGACCACAGGAAATGTTCAATGGGTGATAATTATGGTGACCAGCGTTCCTCTCTCAGATGCAAAGGGAGAGATGAGCAGACGTGTGTCTTGATTCGTTGTTTTGTTTGATTTTTCAG
Seq C2 exon
CTGTGACTTGCAAACCACAGGAACACCCTGACTATGGAAGCCTGAACTGCTCCCACCCGTTCGGCCCCTTCAGCTATAATTCCTCCTGCTCCTTTGGCTGTAAAAGGGGCTACCTGCCCAGCAGCATGGAGACCACCGTGCGGTGTACGTCCTCTGGAGAGTGGAGTGCGCCTGCTCCAGCCTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026582-Sele:NM_011345:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=83.8),PF0008415=Sushi=PU(4.6=8.1)
A:
NA
C2:
PF0008415=Sushi=PD(93.8=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGTACCAATGCATCCTGC
R:
CATGGCAGGCTGGAGCAG
Band lengths:
295-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: