HsaINT0147355 @ hg38
Intron Retention
Gene
ENSG00000168758 | SEMA4C
Description
semaphorin 4C [Source:HGNC Symbol;Acc:HGNC:10731]
Coordinates
chr2:96865666-96865929:-
Coord C1 exon
chr2:96865867-96865929
Coord A exon
chr2:96865765-96865866
Coord C2 exon
chr2:96865666-96865764
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GGACACCTTTCTGCCCCCAGACC
3' ss Score
8.62
Exon sequences
Seq C1 exon
ATCTCCTGGGAGGCCCCCGTGGAGAAGAAGACTGAGTGTATCCAGAAAGGGAAGAACAACCAG
Seq A exon
GTGGGTGCTTGGACGCTGCTCCTGGTGCTGCCTTCACCCCAGGACGTCTCCTCCCATTCTGGCCCTCGCGCTCTCACTAACCGGACACCTTTCTGCCCCCAG
Seq C2 exon
ACCGAGTGCTTCAACTTCATCCGCTTCCTGCAGCCCTACAATGCCTCCCACCTGTACGTCTGTGGCACCTACGCCTTCCAGCCCAAGTGCACCTACGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168758:ENST00000305476:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(13.4=100)
A:
NA
C2:
PF0140314=Sema=FE(21.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGTGGAGAAGAAGACTGA
R:
GACGTAGGTGCACTTGGGC
Band lengths:
148-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development