HsaINT0149201 @ hg19
Intron Retention
Gene
ENSG00000095370 | SH2D3C
Description
SH2 domain containing 3C [Source:HGNC Symbol;Acc:16884]
Coordinates
chr9:130504067-130505243:-
Coord C1 exon
chr9:130505128-130505243
Coord A exon
chr9:130504239-130505127
Coord C2 exon
chr9:130504067-130504238
Length
889 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGACCCCGCCGCTCTGACAGGTT
3' ss Score
8.07
Exon sequences
Seq C1 exon
GTTGCTAGGATACTGGGCGTTACCAAGGAGATGCAGACCCTAATGGGAGTCCGCTGGGGCATGGAACTGCTCACCCTCCCCCATGGCCGGCAGCTACGCCTAGACCTGCTGGAAAG
Seq A exon
GTGAGACAGCGCCGGCACCCGGGGACTCGCGGGGAACCCCCGGCTACCGCACTCCCCGCTGGACGGGGCGGGTTGGCCAATCACAGCCTCAGCTCGGCTCCCAGGGGGCTCTGGCCACGCCTCCCATCCCATTGACCAATCGCAAGCCCTGATAACCCGCTCTAAACAGGCTGATTTCCCAAAGACTGAATCCTGTATCTCCGCATTCGCCTTCCTTTCGCATCCCCTTGACCAGTCATCCCCTTGACCATCAGCCTGGCCTCGCCCATCAGCTGGGGCTCCTCCTTGTTCGTTCTTAAAACTGCTCTGCCTGGCCGGGCGCGGTGGCTCGAGCCTGTAATCCCAGCATTTTGGGAGGCCGAGGCGGGCGAATCACCTGAGGTCAGGAGTTCGACACCAGCCTGGCCAGCATGGCGAAACCCCGTCTTTACTAAAAATACAAAAATTAGCAGGGCGTGGTGGCGCGCGTCTGTAATCCCAGCTCCTCTGGAGGCTGAGGCAGAAGAATCGCTTAAACCCAGGAGGCGGAGGTTGCAGTGAGCAGGGATCGCGCCATTGCACTCCAGACTGGGCGACAAGAGCGAGACTCCGTCTCAAAAAACAAACAAACAAACAAACAAACAAAAACAAAACAAAAAACTACTCTGCGTGATGCATTTCCCTGCTGACCCACAGCTCTGGCCCCGCCCCTGATTTATGCTGACCAATCAGAAGCCCGAGGCCTTGCTTTCCACGCTCTGGCCGCGCCCCCTTATCCCATTGACCCTTACAACCTCTCACGTTGGCTCCGCCCTCCGCCTCTCCCGGCCCAACCACAGGCAGCGCCCCAGGCCCGCACCCCTCACCCCTGTCCCCGAGCCCGCCGCCTCTGACCCCGCCGCTCTGACAG
Seq C2 exon
GTTCCACACCATGTCCATCATGCTGGCCGTGGACATCCTGGGCTGCACCGGCTCTGCGGAGGAGCGGGCAGCGCTGCTGCACAAGACCATTCAGCTGGCGGCCGAGCTGCGGGGGACTATGGGCAACATGTTCAGCTTCGCGGCGGTCATGGGTGCCCTGGACATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095370-SH2D3C:NM_001142531:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(25.3=100)
A:
NA
C2:
PF0061714=RasGEF=FE(38.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGGCGTTACCAAGGAGA
R:
CGAAGCTGAACATGTTGCCCA
Band lengths:
246-1135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)