HsaINT0149319 @ hg19
Intron Retention
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:30418]
Coordinates
chr4:152080392-152086848:-
Coord C1 exon
chr4:152086741-152086848
Coord A exon
chr4:152080505-152086740
Coord C2 exon
chr4:152080392-152080504
Length
6236 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGC
5' ss Score
6.12
3' ss Seq
ATTACTGCTACTTTTTCCAGGTT
3' ss Score
8.05
Exon sequences
Seq C1 exon
ATCCCTTTCAGCTCCCTGCAAAAACAGAACCAATAAAAGAACGAGCAGTTCAACCAGCACCCACCAGGAAGCCCACTGTAATTCGAATTCCAGCCAAACCAGGAAAAT
Seq A exon
GTAAGCACTTCTCTGCTTTCTTTATTAGCTTCTTCAAGAGGCTGGGAGAAATATATGCTAATTTATCAATGTCTGCTTTTGAAATTATGTATAATCTGCCATTCATAGTCAAAGCTATTTAAAAGCAAATTGTTTTTTCACAATTCTTCGAAGAATTAGTTCAGTAAATTTGGATTTCCCTTTCCCCTTCGCTTCCCTTTCCCTTTCCCCTTCGCTTCCCTTTCCCTTCCCTTCCTTTTCCTCTTTTTTTTGGGAGTCACGCTCTCTCACCCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACTGCACCCTCTGCCTCCCGGATTCAAGCAATTCTCCTGTCTTAGCCTCCTGAGTAGCTGGGACTACAGGCACACGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCACATTGGTCAGGCTGGGGATTTCATTTTTCTTTAATGTTGTCTTTAGACAGAGAATAGAGGGAAACTGAAATTTAGAACAATTGTTATATCCCATGTTAACACCTCTGGTACAGATTTGGTGGGAAAGTAATCTAAACTAATAGCAAATAAAGGTGTATATGTCTATCAGTCAGGAGTATATTATTGCAATCAGCATAATCTCAAATATGGCTATGTGTGAATTCGGTGAAGAGCAGTAACCAAAGCTTTAAATAATAGTTTATAAAAATACTTCTTAAATTGGCCAGGTGCAGTGGTTGATGCCGGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACGAGGTCAAGAGATCAGGACTATCCTGGCCAACATGGTGAAACTCTGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGCTGCGCGCCTGTAGTCCCAACTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCATTACAGCCTGGGTGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAATTAGTGTAACGTTACATTTTGGTTTACTTCCTTACTTGATTTTTTCCTTACTTGATTTTTTAATAGTATAACAAATGAAATTCTATAGGAGCTTTAATAAGTACTTCAAAAAGAAATCTGATATTTATTATAATGGGAAAGCCACAAGGGCCAGAATTATTTATTTTAGGCACCAGATTATTAAAAACTGTGATTAAAAGGGTGTTTGTGTATGTGTACACACACACACAGTGGGTTCCAGAGCAGTTCATGGCACTGCTTGGAGTGATCACACAGCTTTCTCTGCGGGCATCTGATTTCATTTATGCCTGCAATGCCTTTATATCATAGCCCGCATGCATTCTTTCCTTTGTCTAACAAGAGATTCTGCCCACTTCATTCCTCCTAAAGCAGAACAAGCATTCCACTCTTTCACCTGTAGCACCCAGGATTGTATGCAGGCATATTCCCTTTATTTTAGGAGTTTGGTTTCTCTATAAAGCACTACCCAGAAGGATCATCTTGGTTTCAGTTTTTTGATGATTCTGTTACTAACTGATGGCTCTCAGCCAAGTAGCAAGAAAATTGAATTGAGTTGCTATGAAGAATGTGGAGGAGAAAAAAATCTAAGGTATCAAATTCTGGTTCTAGTTTCTTAGGAAGTTATATTTTATTTTTTTAGAGGTAATATTTTAATGTTAGATTTAAAAACCAGTGGTAGGCCAGCCATGGTGGCTCACACCTGTAATCCCTGCACTTTGGGAAGCTGAGGTGGGCAGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTATCAAAAATACAAAAAAGTTAGCCAAGCATGGTGGCACACACCTGTAATCCCAGCTACTTGGGAGGCTAAGGCACAAGAATTGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCGAAGATCATGCCGCTGCACTCCAACCTGGGCAATAGAATGAGACTCCATCTCAAAAAAAAAAAAGAAAGAAAGAAAGAAAAAACTGGCAGTATATTTCTTTTGACAATATTATATAGCCCACAAATCAGTAAAACGATAGCTCATTGGGTTGTTTGCCTGTTTGCTATTACTTTGTTAAATGTATTCTGGATTTTAACAAGTATAGTAACATATAATAATAAGAAATTTTGCCTGGGTTTTAAGTAATACAACTTTTACAGAAATTAGTAATAAATACAAATTTTTAAATTTATTCATCTGTTGTGTCATTGTCCCCAAGACCACCCCCAGGTTTGATGATTCACTAGGAGGACTCACAGGACTCAACAGATAGTTGTATGTATGGCTATTATTTATTATAGCAAAAGTATATGAGGCACAATCAGCAAAGAGAAAAGGCAAATGTGGTGAAGTCTGGAGGAAACCAGATGCAAGCTTCCAAGAGTCTTCTACTGGTGGAGTCAGAGGACATATGTAACTCCTCCAGCAATGAGTTGTGATGACAAGTGTGAAATGTCAACCAGAGAAGCTCACTACTGATTCAGTGCCCAGGGTTTTTATTGGGGGCTGGTCAGGTAGGCACTCCTAGAAATTTTGGCACTTACCAAAATTCCAGATTCCCAGAAGGAAAGCAGATGTTCAGCATAAACCATATATTCTGTTTTATCAGTTTTGAGGATGGCGAGAACTGTCCCAAAGTCCAAGTTCCTATATGCCAGTCAAAGACCAATCCTGTGGCTGGGTGTGGTGGCTCATGCCTATAATTCCAGCACTTTGGGAGGCAGAGGCAAGTGGATCACGTGAGGTCAGGAGTTCAAGATCAGCCTGGCCAACATAGTGAAACCCCATCTCTACTAGAAATACAAAAATAAGCCGGGCATGGTGGCATGCGCTTGGCTGATGCAGGAGAATCGCCTAAACCCAGGATTTGGAGGTTGTGTTGAGCTGAGATCACGCCATTGCCCTCCAGCTTGGGCAACAAGAGCGAAACTCAAAAAAAAAAAAAAAAAAAGGGACCAATCTTGTAAGTAGGACTTTCTAGGGATAAAGTTTCAGACCTGCTATGTTTACTTTTTCTGCACACTTGTAAACTGCATTAATAAGCTTTGAAATCCTGAAAAGGATATGCTGAGGAAGCAGCTTTAATTATTATCCTGACAAAGCTCCAAGAACTAGTAGAAAATTGAATTCTAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTTCTAAAAATATAAAAATTAGCCGGGCTGCAGCCATAAAAAAGAATGAGTTCATGTCCTTTGCAGGGACGTGGATGAAGCTGGAAGCCATCATTCTCAGCATGCTAACACAGGAACAGAACTAAACACTGCATGTTCTCACTCATAAGTGGGAGTTGAACAGTGAGAACACGTGGACACAGGGAGGAGAATATCACACACCGGGGCCTGTTGGGGAGTTGGGGGCAAGGGGAGGGAGAGCATTAGGACAAATACCTAATGCATGCGGGGCTTAAAACCTGGATGACGGGTTGATAGGTGAAGCAAACCATCATGGCACATATATACCTATATAACAAACTTGGGTGTTCAGCACATGTATCCCAGAACTTAAAGTAAAATTTTAAAAATATTCTTTTAAAAAATGAATACATAAAAATAAAGGCTCAATTAAAAAAAAAGAATTTAGCCAGGCATGGTGGCACACACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAAAATCACTTGAACCCAGGAGGCAGACGTTGCAGTGAGCCGAGATCATGCCACCACATTCCAGCCTGGGTGACAAAGCGAGACCTCATCTAAAAAAAAAAAAAAAAAAAGAGGTATGAATTGAACAGTGAGAACACTTTGGCCACAGGAGCACACCAACATGGCACATATATACATATGTAACAAACCTGCACGTTGTGCACATGTACCCTAGAACTTAAAGTATAATTAAAATATATATATATATATATATATGTATAAAAGACAAAAACAAAGTGAGGAGGACTTTCTGCTTTAAATGGCAGGTAATTTATACCCAAAGAGGGTATTTTAATTCATCATTAAGCTCCTCTTCAAAGAAAAAAAGTAAGTTGAATTCTATACTGCCAAATGTAGGAGAACTGAAATGACAGAATGATTTCTAGAGAGTTATTTCTATTTATACCAAAAATCAATTCCTCAGAATTTTATTAATATAATAATGCATATATTCTGTGGAGGAAAAAGAATGAAACTTTGGTGTCTGAAGAATTTGGAATGGTCAAGGGAAAAAGGGGATAGCTTCGTGGTGCAAATGTCCTTGATCTTATTTGAACCTGTCAGCTCCTTTCCCCGGGGCCTGTTTCTTCTGACCAGGTTGTCCTTTTCCCAGATGTCTGCAAGGCTCCCTCCCTCACCAATCCTTCAGGTCTTTGCTCATTGCCACTTTTTCTCAGAGACCTTCCCTGACTACATTATTTAAAATTGGAAATCTCCTACCTCCACATCCCACACATACTCACACCAGATACTCCCTGTGTTTCTCCTTCCAGTAAGCTATCTCCTTTCTACTTTCATATTACTGGCTTATACTCTTAAATATTTGTCACGACAGTATTATACTCTATATGATTAACTATTTCCTTGTAAGAATAAGGAAACCACAGCACAGAAAATATCTTCAAGATGGTGACTGAGTTGGATGTTTTTATTATATATGTCTTAATTCCCAGAGCCACTGCACGCCTCTCACTAAGAATGTTTGCCTCGCTCTAAATCATTGTTTTCCTAGTTGCTGGCCTGGGTATTTTCCTCCCTTTGAGAATGTTGTCCTGTCTGCGGATAAAACAGGAACCTGACAAATCATCTTCTTGTTATAGGTTTTTCACTTGAAATGGAAGAAGAGAGTGTACATTTGAAAAAAAAAAAAAGAGAGAGAAAGAGACAGAGTGCTCATCTGCTCATCTCCTTTTAATGTCTAAACCAAACAGTGTAAAAGGTGGCTTTAGCGTCCTTCAGTATGTTACAGTCATTCACTCTCCCAATTGTTTTTGCACACTCATTTTAATTAGCTGTCACTAATTTGGTCATCTTGGTTTTCTTCTTTTTAAAATAAGTTGGGGCTACATTATCACTGATGTGGGTGTGGTTTGGATGTAAAGGTATTGTTTGTTTAATTGAGGGCAATTATGTTCATTATTCAGAAGCTACTGAATTAGAAAACACATTGGGCGGATGCAGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGGCAGGCGTGGTGGCGGGTGCCTGTAGTCCCAGCTACTCCGGAAGCTGAGGCAGGAGAATGGCGTGAACTCAGGAGGCGGAGCTTACAGTGAGCCGAGATTGCACCACTGCACTGCAGCCTGGGTGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAGAAATAAAACACATTGAATTATTTTTGGATGAGGGAGTGTTGGATACACCACCTATTAAGAAGCAGCATGCCTTATCAAAATGAACATGGACTTTTAGGTTCAAAACAATGGATCTGACAATTACTAGCAATAAGACCTTGGGTAGTGCATTTATTTTCTTCTTAGCTTCAGTTTCTTCATCTGTAAAACAGGTAGGATATTATCTAGTGTAGCACTGTGCGATAGAACTTTCTACAAAGATAGAAATGTTCTTTAACTGTGCTGGTAGCCACTAGTCACAGTGGCTAGTAATTTGAAATGTGGCTAGTGCAACTGAGGAACTGAAATTTTAATTTAATTTAATTTTAATTAATTAAGATTTAAGACTAAATCATCAGATGTAGCTACTAGCTAGTGGACTGGACAAATCTAGCACATAGATCTTGGTTGGAGAAATGTATGTAAATATAGAGCCTAACTTAATTCCTGGCACATAAAAGGTTCTCAACAATGCTGGCTGCTGTTGAATTGTTTAGTATTATTTTCACTCTCTATAAAAACATATAGTAAAATTAACTGATGTTGACTAACACATCAATTTTCTGAAGTTTGCTGGGAGCTCTTTCTCATTTGCTTAACTATTTGTGTGTATCTTTTATGATAGCCATTTTTCTAATAAACTAAGCAGCAATCATTTCATTCTTTGGAATCCCAGAAACTAGAAATTATTGATGAATTACTGCTACTTTTTCCAG
Seq C2 exon
GTTTACATGAGGATCCACAAAGTCCACCTCCTCTCCCTGCTGAAAAACCTATTGGAAACACTTTCAGTACAGTATCTGGAAAGCTCAGTAATGTTGAGAGAACTAGAAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686-SH3D19:NM_001128923:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)