BtaINT0132523 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016813 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr17:6647776-6654520:+
Coord C1 exon
chr17:6647776-6647886
Coord A exon
chr17:6647887-6654404
Coord C2 exon
chr17:6654405-6654520
Length
6518 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGC
5' ss Score
6.12
3' ss Seq
AATTATTGTTATTTTTCCAGGTT
3' ss Score
8.47
Exon sequences
Seq C1 exon
TAGATCCCTTTCAGCTCCCCACCAGAACAGAACCAACAAAGGAACAAGCAATTCAACCAGCACCCACCAGGAAGCCCACTGTGATTCGAATTCCAGCCAAACCGGGAAAAT
Seq A exon
GTAAGCACTTCTCTGCCTCATTTATTTTTCACTCCAGGAGCTGGGGAGAAATATATGCTAATTTATCAATGTTTGCTTCTGAAATTATGTGTAATCGGCCATTTATTATTATTACTCATAGCTGAGAACATATAAAAGCAAGTTGTTTTTTCATAATTCTCTAGACAATTAGTACAGTTAATTTAGATTTTACTTCTCTTTAACATCCTTTTAGGCAGAGAGATTAGAATAATCTTAAACTCAGAATAAATGTAATATCCTATGTTAGTGCCAGTAGTAAAGACAGAGTGGAGAAGTAGTTGAAACTGATAGCAAATACAATTGTATATGTCTGTTAGGAGTATATTATTCCAGTCAGCATAATCTAAATATAGCTATGTGTGAATTGTCTGAAAGGAAATAACCAAAAGTTATAAAAAAGTAGCTATGTATAAAAAGACTTTTTAATTAGTATAACATTACATGTTTTATAAACTTCCTTACTTGATTTTTTCTGGGGGGCTGCCTTCGCGGGCTGTTAGTTCCTCAACCAGGGATCAAACCCAGGGTCTTAGCTTTGGAAGTGCAGAGCCCTAACCACTTTCACATTCTTACATGAAATTTTGGATGAGTTTTAATAAGTACTGCAAACAAAAACAAATCTGATATTATTATAAGAGAGAATCCTAGAGGGCCAAGAGAAAAAGTGTGTGAGATGTCTGTACACAAATGACAGACAGTGGGTTCCAGGTAATCACACACTTCCTCTGTGAGCCTCTTTCATTTCATTTCCTCTAACGCTTTTGCATAGCCCAGAGGCTGTCTAAGGAGACCCTGCCACTGCGTTCCTGCCAACAGCGGAGCAAGTATACCAGTCCTTCACCTGCAGCATCCCAGGGTTACGCTGTAGGCAGGCCCTGCAATGCCATGAAACCCCTTTAGCTTAGGGGTTTGACCTCTCTCTCTGTAAAATACTACCTAGAAGAATCATATTGGTTTCAGTCTCTTAATGGTTTTATTAACGAATGGCTCCAACCCAAGTAGTGAGAAGATTGAACAAAGTTGCTATGGAAAATGAGGAAGAGAGAAAGTTAACGGTACCAAAATCTAGTGGGTTTTCACTTCGTTCAGTTCGGTCGCTCAGTCATGTCCTACTCTTTGTGACCTCGTGGACGTCAGCATGCCAGGCCTCCCTGTCCATCCCCAACTCCCTAAGTTTACTCAAACTCATGTCCATTGCGTCAGTGATGGCCATCCAACCATCTCATCCTCTGTCGTCCCCTTCTCTTCCCACCTTCTATCTTTCCCAGCATCAGGCTCTTTTCCAATGAGTCAGTTCTTCGCATTAGGTGGCCAAAGTATTGGAGTTTCAGCTTTGGCATCAGTACTTCCAATGAATATTCAGGACTGATCTCCTTTCGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTCCTCCAGCACCACAGTTCAAAAGCATAAATTCTTCAATGCTCAGCTTTATTTATAGTCAAACTCTCACATCCTTGACTAGATGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTTAATATGCTGTCTAGGTTGGCCAAAACTTTTCTTCCAAGAAGCAAAGGTCTTTTAATTTCATGGCTGCAGTCACCATTTGCAGTGATATTAGAGCCCCCCAAAAATAAAGTCTGTCACTGTTTCCATTGTTTCCCCAACTATTTGCCATGAAGTGAGGGGACCAGATGCCATGATCTTAGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTCACTCTCCACTTTCACTTTCATCAAGAGGCTCTTTAGTTCTTCTTTGCTTTCTGCCATAAGGGTGGTGTCATCTGGATATCTGAGGTTATTGATATTTCTCCCAGCAATCTTGATTCCAGCTTGTGCTTCATCCAGCCCAGCATTTCTCATGATGTACTCTGCATATAAGTTAAATAAGCAGAGTGACAATATACAGCCTTGACGTACTCCTTTCCTGATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCTTGACCTGCATACAGATTTCTCAGGAGGCAGGTCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTTGTTTGTTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAACAAAAGTAGATGTTTTTCTGGAACTCTTTTGCTTTTTTGATGATCCAACAGATGTTAGCCATTTGAACTCTGGTTCCTCTGCCTTTTCTAAATCCAGCTTGAACGTCTGGAAGTCCATGATTCATGTACTGTTGAAGATTCGTAGGAAGTTATATAGTAGTTTTAGACTAAAGAACTGGTAATGTGTTTCTTTTGACAGCATGATATAACCCACGGATATAGCCCACGTGACAGCTCATTGGATTGTCTGCTTGCTTGCTGTTACCTTATTATAAAGTGTTTGGGATTTTAATAAGCCTTGTGAGATATAATGATAATAAATATTGTCCAAAGTTCATGTGACTTCAAGGAATACAACTTGTACATTGAAATGTATTCTCCTGTTGTGTCAGGGTCCCCAAACCCCCATGTTTGGTGATTTGCTAGGAGGACTCACAGAACTTAGCATACTGTGATTTACCAGAAGGCAAAATCTGCAGAGGGAAAAGGTGCACGGGGCAAAGTCTGGAAGAAACCAGGCACAAGCCTCTGGGAGTCCTCTCCTAGTTGGGTTGCACAGGATGTTCCTCAGTCTCCTCAGTTGTGAAATGTCAATCAAGGAAGCTCATTAGAGACTCAGTACCCAGGTGTTTTGTTGGGGGCTGTTTACATGGGCACCTGTAGAAATTCTGTTATGTACCAAAATTCCAGATTCTCAAAGGGAAGCAGGTGGTCAGCGTAAACCGTATTCTTTTGTTTTATCTGTTCTGGAAATAGTGGGAACCTTCCCCAAATCCAACTTTCTAGGCCATCAAGGGCCACGCTTATAACTCAGTCCTGAGGTGTTTATTCTTTTCTATATACTGATAAATTGGATTAGCAGTCCTGAAATCCTGAAAAAGACATATTGAAGGAGCACCTTTATTTATTCTCCTGACAAAGCTCCAGGAGCTATTAGAAAGCTGAGTTCTGTACTGCTGTATGTAAGAGAACGGAAGGGCTAGTTTCTAGAGAATTATTTCTGTTTGTATAAAAAACTAGTTCCCCAGGGACTTTCCTGGTGATCCAGGGGTTAAGACTCTGTGCTACCACTTCAAGGGACACTGATTTGATCCCTGGTAGGGAACTAAGATCTTATATGCCACAAGGCATAGCCAAAAAAAAAACAGTCCCCTCAAATTTTATTACTACAATTAGTAAGCAATGCATATATGCCGTGGAGGAAAAAAAAATAAGACTTGGTGTCTGAAAAACTTTGAATGGATAAGAAAAGAAACAAACAGCTTTGTGGTGCAAAATTCCTTCCTCTGAACCTGTCAGCTTCTTCCCCTGGAGACCTGTCTCTTCTGACTAAGATGTCCTTTCCCCAGATATCTGCATAGCTTCCTTCTTCACTGTTCTTTCAGGTCATTGCTCAAATGGCACTTTTCTCATTGAGGCCTCCGCTGACCACGTTATTTGAAATCGAAAATCTCCACCTCCCCCACGTACCCACATCAGATAATTACTACGTCCCTTACTTCCAGTAAGGTATCTCCTCTCTACTTTCAGTTCAGTTCAGTTCAGTCACTCAGCTGTGTCCGATTCTTCGCGACCCCATGAATCGCAGCACACCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTTCACTCAGACTCACATCCATCGAGTCGGTGATGCCATTCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCACATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTTAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCATGTTCTTACTACTTTGTACCCTTCAGTTTTTTGTCACGACAATATATCCTAAGTGATTCATTATTTCTGTGTAAGAATAAGGAAACTACAACACAGAGAGAGTCTTCAAGATGACAACTGAGTTGGACAGTCTCTGTACGGCAGCCCTGCCTCTCACCAAGAAGGCTTGCCTGTCTCTGTATCATCGATTTCCTAGTAGCTGGCCTGGGTACTTTCCTCCTTTGTGAGTGTTTCCCTGTCTGTGAATAAAACAGGAACTCATCCTCTTGTTGGAAGTTTTTCATGTGACATGGAAGCAGACAGCGTTCATTTGAATGAGAAAGATTCCCATCTCCTTTAAATGCCTTAACCAGTAAAAGGTGGCTTCAGCCTTTAAAGTATCCTTTAAAGGATACTTTACCATCATCCTCTCTCCAAGTATTTTGCACACAGCTTTTACTTAGCTATCACAAATTAAGCCTGGTCATCTTTGTTTTCTTCTTTTTATACTAAGTTGGTACACTATCTCTGGGTTAAGGATATAATTTGAATGTAAAGATATTGCTTGTGGAAATGAGAGCAATTAAGCCCATTAATCTGGAGCTGATGAATTGGAAAGCACATTTAATTATTTGGATCGGGGGAGGGTTGGACACACCACCTATTAGGAAGCAGTAAGGCTTATTACAATGAGAATAGACTTTTGGGTTCAAAGCTGTGGTCTGACTGTTACTAGCATCAAGACCTGGATGTTTTTGTTGTTCAGTTGCTAAGTCATGTCCATCTCTTTGCTACCTCATGGATTGCAGCACGCCGGACTTTCCTGTCCTTCACCATCGCCCGCAGTTTGCTCTAACTCTTGTCCATTGAGCCAATGATGCCATGCAACTATCTCATCCTCTGTCATCCCCTTTTCCTATTGCCTTCCATCTTTCCCAACATCAGGGTCTTTTCCAATGAGTTAACTCTTTGCATCAGGTGGCCAAATATTGGAGCTTCAGCATCAGTACTTCCATTGAATATTCAAGTTTGGTTTCCTTTAGGATTGACTGGTTTGATCTCCTTGCTGTCCAAAGGACTCTCAAGAGTCTTCTCCAGCACCACAATTCAAAAGCATCAATTCTTCGGTGCTCAGTCTTCTTTATGGTCCAACTCTCACATCCATATATGACTACTGGAAAAACCATAGCTTTGACTATACAGACCTTTGTCAGCAAAGTGATGCTTCTGCTTTTTAATACACTGTCTAGCTTTGTCATAGCTTTTCTTCCAAGGAGCAGCTGTCTTTTAATTTCATGGCTGCAGTCAGCATCCATAGTGATTTTGGATTCCAAGAAAATAAAATCTGTCATTGTTTCCATTTTTTCCCCATCTATTTGCCATGAAGTAATGGGACCAGAAGCCATGATGTTAGTGTTTTGAATGTTGAGTTTTAAACCAGTTTTTTCACTCTCCTTTTCCCCTTTCATCAAGAGGCTCTTTAGCTTCTCTTTACTTTCTGCCCTTAGAGTGATACCATCTCTATACCTGAGGTTGTTGATATTTCTCCTGGTAATCTTGATTCCAGCTTGTGATTCATCTAGCCCAGCATTTCACATGATGTACCCTGCATATAAGTTAAATAAGCAGGGTGACAATATACAGCTTTGACGTACTCCTTTCCCAATTTGGAACCAGTCCGTCGTTACATGTCCGGTTCTAACTGTTGCTTCTTGTCCTGCATACAGGTTTCACAGGTGGTCTGGTATTCCCATCTCTTTAAGAATTTTCCACAGTTTGTTGTGATCCACATAGTCAAAGGCTTTAGCATAATCGATGAAGCAGAAGTAGATTTTTTCTGGAATTTCCTTGCTCTTTTCTATGATCCAGTGGATATTGGAAATTCAGCTTGTACATGTGGAAGTTCTCTGTTCATGTACTGTTGAAGCAAGACCTGGGTAGTTCATTTGTTTTCTTCTCAGCTTCAGTCTCTTCATCTGTCAAATGGACGCAATGCTATCTAGCATAGTGCTGTCTAATATGGTAGCCAATAACCACATGTGGCTACTGAGAACTTACAGTGTGGTCCATGCAACTGCAGGATTGAACTGTTTATTTAATTTTAATTAAGATTGAAGTTCAAACTGCCATAGTGGCTACTAGCTAGCAGATCTAGCACTTAGATAGATGTTGGTTAGAGAGATGCATATGGATAAAGTGCCTTAACCTAATGCCTGGTCCATAGAAGGTTCCAACAAATGCTGGCTCACTGTTGTAATTGTTTAGTGTCATTTTTACTCTTGATGAAACATTGGGTAAAACTGACTGATGGCTGCTAACCCATCGATTTTCTGAGATTTGTCAGGAAATCTTTCTCATTGCTTAGCTGTCTATTCTTTTTGTGTATGGACATTTTCTTAAGGAAGCGAGCTGCAGTCTTTCCATCCTGTGAAACCCTCGAAGACTAGAAATTACTGATTAATTATTGTTATTTTTCCAG
Seq C2 exon
GTTTACATGAAGAGGATCCACAGAGCCCACCTCCTCTCCCTACTGAAAAACCTATCGGAAACACCTTCAGCACAGTATCTGGAAAGCTTGGTAATGCTGACAGAACTAGAAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016813:ENSBTAT00000022368:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development