HsaINT0151741 @ hg19
Intron Retention
Gene
ENSG00000125648 | SLC25A23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:HGNC Symbol;Acc:19375]
Coordinates
chr19:6452323-6454099:-
Coord C1 exon
chr19:6453992-6454099
Coord A exon
chr19:6452491-6453991
Coord C2 exon
chr19:6452323-6452490
Length
1501 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GATAACCAGGTTCTCCCCAGGTG
3' ss Score
3.7
Exon sequences
Seq C1 exon
ATCAAGAGGGCCATCCTGGGGCAGCAGGAGACACTGCATGTGCAGGAGCGCTTCGTGGCTGGCTCCCTGGCTGGTGCCACAGCCCAAACCATCATTTACCCTATGGAG
Seq A exon
GTGAGAAGGAGGGACCCCAGCGGAGGCCCCATGGCAGGGTGGGGGGCCTGCTGTACCCATCTCACTCTGCATTTCACAATATCCATTGGGATTTTACCTTTGTCCCTCTCTGATTTGGAGTATAGCTCATCAGAGTAATGCAATTTCATGTGTAGCCTGTCTGGGTATTACAACTGAGATATAATTTCTGGGGAAGGTAGTGTCGGTTATCCTTGTTTGGATGGTAGTCATAGGAGCCAGCTGTTTATAAATATGCATCTTCTAAGGATAGGGTGCACGTTCCCAGGGACGTCGTGTCTAGGTGTCACCAACTGTTTATGAATATGCCTCTTCTAAGGATAGACTGTGCTAGCTACATGTTTTCAGATAAATTATTTCAGGTTTCAGGTTATGAAGTGTATTGTTTGGATTCTGAAAGTGACAGAAAACTTAAATCATGTCAGCTGGGTGCGATGTCTAGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGACCAACATGGTGAAATACCGTCTCTACTAAAAATACAAAAATTAGCTGGGGATGGTGGTGGGCACCTGTAATCCCAGACACTTAGGAAGCTGAGGCAGGAGAATGGCTTGAACCTGGGAGGCGGTGGTTGCAGTGAGCCAAGATCATGTCACTGCACTCAGTCTGGGCAACTGAGCAAGACTCCAGCTCAAAAAAAAAAAAAAAAAAACTTCAATCACATCAACAAAGTCTACAGATGAGCATTTCAGGCTGGGATGGTAGCTTCAGAGTGTTAGCGATGCAGGTTCTTTCTGTCTATCTTGTTGTTACACAACCTCATGGACCAATGTGGCTGCTTGTGCTCCGTTCATCACATTCCACACTCCAGCCAAGAAGGAAGAAGCAATAAAAAAGGAAACACCTCCCCACCTCTAAGGATGCTTTCTGAACCTTATGTGTACCTCTTTCTCTTCCTTCTATTTCTTTGGCTAGGACATAGTGACATAGCCACATACCCAGGGCATCTGGGAAATGTCATTTTTCTTTCTAGTGGCTGTGTGCTTGCTGAAAGTTACAGTTTCTGATATGAAAGCAGAAGGGAACAAGATACTGGAGGTCTGGGCATGATGGCTCATGCCTGTAACCCCAGTCCTTTGGGAGATGGAGAGGGGAGGATCACTTGAGCCCAGGAGTTCGAGACCAGCACGGGCAAAGTAGCGAGTCCCCATCTCTACAGAAATGACCAAAAAATAAAAGAAAGATATCAGGAGACAGTTACTGGTGGTGCCACATGTGTGCACTTTGGTAGGTGTAACTATTTCTAGGTATAGGGATTTGGGGATAGCAGAAGATTCTAGAGTAGGTGGTTTTTAAAATTCGGTTGTTCTCAGGGCATCTGTTTTCAGGAGTAGCTATTTCTAGGTGTCTTCATTCCTGGATGTAGCGATTTGGTGGGACAGCTTTTCCAGGGATAACCAGGTTCTCCCCAG
Seq C2 exon
GTGCTGAAGACGCGGCTGACCTTGCGCCGGACGGGCCAGTATAAGGGGCTGCTGGACTGCGCCAGGCGTATCCTGGAGAGGGAGGGGCCCCGTGCCTTCTACCGCGGCTACCTCCCCAACGTGCTGGGCATCATCCCCTATGCGGGCATCGACCTGGCCGTCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125648-SLC25A23:NM_024103:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(24.3=24.3),PF0015322=Mito_carr=PU(28.0=70.3)
A:
NA
C2:
PF0015322=Mito_carr=PU(69.4=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCTGGGGCAGCAGG
R:
CGTAGACGGCCAGGTCGAT
Band lengths:
264-1765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)