RnoINT0136917 @ rn6
Intron Retention
Gene
ENSRNOG00000047781 | Slc25a23
Description
solute carrier family 25 member 23 [Source:RGD Symbol;Acc:1588586]
Coordinates
chr9:9994575-9995290:+
Coord C1 exon
chr9:9994575-9994682
Coord A exon
chr9:9994683-9995122
Coord C2 exon
chr9:9995123-9995290
Length
440 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTAACAGAGTTCTCACCTAGGTA
3' ss Score
0.78
Exon sequences
Seq C1 exon
ATCAAGCGGGCCATCTGCGGGCAGCAAGAGACACTGCACGTTCAGGAGCGCTTCGTGGCTGGCTCCCTGGCCGGGGCCACAGCTCAAACCATCATATACCCCATGGAG
Seq A exon
GTGAGAAGGAGGGGGCTCGAGAAAGATCCAGAATGGGAAGGTGGGCCTCCTATACTGTTTCATTGCCCACTCTGCCTCAACTGCCTGACTTGGGACTGAAAGCCATTTCCTGTCTAGCTTGTCTGGGTTTCTCAATTTGAGCTGTGTGTAACTCCTAGGGACTTGGTTAGAACTGTTTGCACAGTAGTCATAGCAACTGGCCATTTATGGATATGCCTGCCAAGATAGAGGACAGCAGGTGTGTCCTAGCACATCTGGTTTATGTGGTGCTGGGGCTAGAACCCAGTGTTCCGTGCACCCTAGGTGGGCACTCTACCACTCAGCCCCAGCTGGGCCCTCAGCATGTCTGCTTTCAGGAAGAGCCACGTCTAGGTGATGTCACTTCTGGGCATGATGATTCTGAAAGCAATTTTCAAGAGGTTAACAGAGTTCTCACCTAG
Seq C2 exon
GTACTAAAGACTCGGCTGACTCTACGCAGAACTGGCCAGTACAAGGGGCTCCTGGACTGTGCAAGGCGAATCTTAGAGCGTGAAGGGCCACGCGCCTTCTACCGTGGCTACCTGCCTAATGTGCTGGGCATCATTCCCTATGCAGGAATCGACCTAGCTGTCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047781:ENSRNOT00000073000:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(8.6=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
A:
NA
C2:
PF0015322=Mito_carr=FE(59.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGAGACACTGCACGTTC
R:
CTCGTAGACAGCTAGGTCGAT
Band lengths:
254-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]